myRT

myRT report for GCA_002291055.1_ASM229105v1

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Seq: NSEE01000110.1 Escherichia coli strain JEONG-5114 NODE_326_length_935_cov_9.88119_ID_651, whole genome shotgun sequence (935 bp)
Overview 1 RT 1: 1-935 bp Neighborhood of RT #1 [1, 935] RVT_N RVT-GII Feature: gene Location: 1-676 bp Ori: PAZ81912.1 Feature: domain Description: RVT_N Location: 49-286 bp Feature: domain Description: RVT_N Location: 49-286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: gene Location: 822-935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: NSEE01000235.1 Escherichia coli strain JEONG-5114 NODE_172_length_6192_cov_7.99505_ID_343, whole genome shotgun sequence (6192 bp)
Overview 1 RT 1: 4338-6192 bp Neighborhood of RT #1 [4338, 6192] ParE_toxin RVT-UG4 Feature: gene Location: 4338-4448 bp Feature: domain Description: ParE_toxin Location: 4347-4446 bp Feature: domain Description: ParE_toxin Location: 4347-4446 bp Feature: gene Location: 4453-4632 bp Feature: gene Location: 4798-5727 bp Ori: PAZ79505.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5020-5461 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 502 0-5461 bp Feature: gene Location: 5690-6192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE_toxin (pfam05016), RVT-UG4

Seq: NSEE01000020.1 Escherichia coli strain JEONG-5114 NODE_181_length_5470_cov_12.2325_ID_361, whole genome shotgun sequence (5470 bp)
Overview 1 RT 1: 124-4198 bp Neighborhood of RT #1 [124, 4212] DDE_Tnp_ISL3 HTH_28 rve rve_2 RVT-GII IstB_IS21 Y1_Tnp Feature: gene Location: 124-1017 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 268-976 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 268-976 bp Feature: gene Location: 1083-2129 bp Ori: PAZ83094.1 Feature: domain Description: HTH_28 Location: 1203-1326 bp Feature: domain Description: HTH_28 Location: 1203 -13 26 bp Feature: domain Description: rve Location: 1614-1944 bp Feature: domain Description: rve Location: 1614-1944 bp Feature: domain Description: rve_2 Location: 1971-2076 bp Feature: domain Description: rve_2 Location: 1971-2076 bp Feature: gene Location: 2264-3097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2267-2705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2267-2705 bp Feature: gene Location: 3334-3744 bp Feature: domain Description: IstB_IS21 Location: 3337-3718 bp Feature: domain Description: IstB_IS21 Location: 3 3 3 7-3 718 bp Feature: gene Location: 3799-4212 bp Ori: PAZ83095.1 Feature: domain Description: Y1_Tnp Location: 3853-4198 bp Feature: domain Description: Y1_Tnp Location: 3 853 -4198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISL3 (pfam01610), HTH_28 (pfam13518), rve (pfam00665), rve_2 (pfam13333), RVT-GII, IstB_IS21 (pfam01695), Y1_Tnp (pfam01797)

Seq: NSEE01000008.1 Escherichia coli strain JEONG-5114 NODE_213_length_3437_cov_12.5224_ID_425, whole genome shotgun sequence (3437 bp)
Overview 1 RT 1: 139-3152 bp Neighborhood of RT #1 [139, 3181] PRK09738 RVT_N RVT-GII GIIM HNHc HNH Feature: gene Location: 139-318 bp Ori: PAZ83146.1 Feature: domain Description: PRK09738 Location: 142-295 bp Feature: domain Description: PRK09738 Location: 14 2-295 bp Feature: gene Location: 883-2562 bp Ori: PAZ83148.1 Gene: ltrA Feature: domain Description: RVT_N Location: 934-1177 bp Feature: domain Description: RVT_N Location: 934 -1177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1222-1864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1222-1864 bp Feature: domain Description: GIIM Note: maturase Location: 1918-2149 bp Feature: domain Description: GIIM Note: maturase Location: 1918-214 9 bp Feature: domain Description: HNHc Note: nucleases Location: 2362-2524 bp Feature: domain Description: HNHc Note: nucleases Location: 2362-2524 bp Feature: gene Location: 2727-2912 bp Feature: gene Location: 3053-3181 bp Feature: domain Description: HNH Note: nucleases Location: 3059-3152 bp Feature: domain Description: HNH Note: nucleases Location: 3059-3152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HNH (pfam01844)

Seq: NSEE01000368.1 Escherichia coli strain JEONG-5114 NODE_318_length_993_cov_30.6905_ID_635, whole genome shotgun sequence (993 bp)
Overview 1 RT 1: 1-715 bp Neighborhood of RT #1 [1, 993] RVT-GII GIIM Feature: gene Location: 1-993 bp Ori: PAZ78441.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-430 bp Feature: domain Description: GIIM Note: maturase Location: 481-715 bp Feature: domain Description: GIIM Note: maturase Location: 481-715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NSEE01000262.1 Escherichia coli strain JEONG-5114 NODE_86_length_18581_cov_11.035_ID_171, whole genome shotgun sequence (18581 bp)
Overview 1 RT 1: 1-2886 bp Neighborhood of RT #1 [1, 2891] RVT-UG4 PrgH Feature: gene Location: 1-518 bp Feature: gene Location: 522-902 bp Ori: PAZ79048.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 525-678 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 525-6 78 bp Feature: gene Location: 984-1385 bp Feature: gene Location: 1689-2891 bp Ori: PAZ79050.1 Feature: domain Description: PrgH Location: 1749-2886 bp Feature: domain Description: PrgH Location: 1749-2886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PrgH (TIGR02554)

Seq: NSEE01000256.1 Escherichia coli strain JEONG-5114 NODE_3_length_110296_cov_4.94855_ID_5, whole genome shotgun sequence (110296 bp)
Overview 1 RT 1: 1-3080 bp Neighborhood of RT #1 [1, 3085] RVT_N RVT-GII PRK10472 PRK10739 Feature: gene Location: 1-676 bp Ori: PAZ79225.1 Feature: domain Description: RVT_N Location: 49-286 bp Feature: domain Description: RVT_N Location: 49-286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337 -67 3 bp Feature: gene Location: 1272-2435 bp Feature: domain Description: PRK10472 Location: 1275-2430 bp Feature: domain Description: PRK1047 2 Location: 127 5-2430 bp Feature: gene Location: 2492-3085 bp Ori: PAZ79126.1 Feature: domain Description: PRK10739 Location: 2495-3080 bp Feature: domain Description: PRK107 39 Location: 2495-3080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PRK10472 (low affinity gluconate transporter; Provisional), PRK10739 (YhgN family NAAT transporter)

Seq: NSEE01000248.1 Escherichia coli strain JEONG-5114 NODE_166_length_6527_cov_7.29828_ID_331, whole genome shotgun sequence (6527 bp)
Overview 1 RT 1: 2301-6527 bp Neighborhood of RT #1 [2301, 6527] rve RVT-GII GIIM Feature: gene Location: 2301-3500 bp Ori: PAZ79287.1 Feature: domain Description: rve Location: 2490-2826 bp Feature: domain Description: rve Location: 2490-28 26 bp Feature: gene Location: 4074-4286 bp Feature: gene Location: 4613-5983 bp Ori: PAZ79288.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4949-5561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4949-5561 bp Feature: domain Description: GIIM Note: maturase Location: 5621-5825 bp Feature: domain Description: GIIM Note: maturase Location: 5621-58 25 bp Feature: gene Location: 6032-6359 bp Feature: gene Location: 6400-6527 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-GII, GIIM (pfam08388)