myRT

myRT report for GCA_002291115.1_ASM229111v1

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Seq: NSEP01000193.1 Escherichia coli strain JEONG-5650 NODE_203_length_1698_cov_5.27053_ID_405, whole genome shotgun sequence (1698 bp)
Overview 1 RT 1: 29-1049 bp Neighborhood of RT #1 [29, 1698] RVT-UG8 Feature: gene Location: 29-1698 bp Ori: PAZ97586.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 599-1049 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 599-1 049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8

Seq: NSEP01000403.1 Escherichia coli strain JEONG-5650 NODE_93_length_13994_cov_38.6564_ID_185, whole genome shotgun sequence (13994 bp)
Overview 1 RT 1: 1-2053 bp Neighborhood of RT #1 [1, 2163] RVT-UG4 ParE_toxin DEDD_Tnp_IS110 Feature: gene Location: 1-503 bp Feature: gene Location: 466-1395 bp Ori: PAZ93875.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 688-1129 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 688-112 9 bp Feature: gene Location: 1745-1855 bp Feature: domain Description: ParE_toxin Location: 1754-1853 bp Feature: domain Description: ParE_toxin Location: 1754-1853 bp Feature: gene Location: 1855-2163 bp Ori: PAZ93876.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 1888-2053 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 1888-2 053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, ParE_toxin (pfam05016), DEDD_Tnp_IS110 (pfam01548)

Seq: NSEP01000332.1 Escherichia coli strain JEONG-5650 NODE_132_length_6839_cov_30.7169_ID_263, whole genome shotgun sequence (6839 bp)
Overview 1 RT 1: 2301-6622 bp Neighborhood of RT #1 [2301, 6690] rve RVT-GII GIIM InsQ Feature: gene Location: 2301-3500 bp Ori: PAZ94337.1 Feature: domain Description: rve Location: 2490-2826 bp Feature: domain Description: rve Location: 2490-2826 bp Feature: gene Location: 4074-4286 bp Feature: gene Location: 4613-5983 bp Ori: PAZ94338.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4949-5561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4949-5561 bp Feature: domain Description: GIIM Note: maturase Location: 5621-5825 bp Feature: domain Description: GIIM Note: maturase Location: 5621-5825 bp Feature: gene Location: 6032-6359 bp Feature: gene Location: 6400-6690 bp Ori: PAZ94339.1 Feature: domain Description: InsQ Location: 6409-6622 bp Feature: domain Description: InsQ Location: 6409-6622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: NSEP01000295.1 Escherichia coli strain JEONG-5650 NODE_42_length_35808_cov_22.3043_ID_83, whole genome shotgun sequence (35808 bp)
Overview 1 RT 1: 30718-35679 bp Neighborhood of RT #1 [30718, 35808] mutS1 INT_Rci_Hp1_C INT_P4_C RVT-UG3 Feature: gene Location: 30718-33285 bp Ori: PAZ95038.1 Gene: mutS Feature: domain Description: mutS1 Location: 30754-33274 bp Feature: domain Description: mutS1 Location: 30754 -33274 bp Feature: gene Location: 33445-34905 bp Ori: PAZ95036.1 Feature: domain Description: INT_Rci_Hp1_C Location: 33820-34027 bp Feature: domain Description: INT_Rci_Hp1_C Location: 33820-34 027 bp Feature: domain Description: INT_P4_C Location: 34246-34783 bp Feature: domain Description: INT_P4 _C Location: 34 24 6-34 783 bp Feature: gene Location: 34902-35808 bp Ori: PAZ95037.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 35184-35679 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 35184 -35679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mutS1 (TIGR01070), INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG3

Seq: NSEP01000092.1 Escherichia coli strain JEONG-5650 NODE_260_length_935_cov_36.1498_ID_519, whole genome shotgun sequence (935 bp)
Overview 1 RT 1: 1-932 bp Neighborhood of RT #1 [1, 935] RVT_N RVT-GII Feature: gene Location: 1-114 bp Feature: gene Location: 260-935 bp Ori: PAZ98645.1 Feature: domain Description: RVT_N Location: 308-545 bp Feature: domain Description: RVT_N Location: 308-5 45 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596-932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 96-932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: NSEP01000124.1 Escherichia coli strain JEONG-5650 NODE_165_length_3411_cov_36.356_ID_329, whole genome shotgun sequence (3411 bp)
Overview 1 RT 1: 204-2138 bp Neighborhood of RT #1 [204, 2152] RVT-GII IstB_IS21 Y1_Tnp Feature: gene Location: 204-1037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207-645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207-6 45 bp Feature: gene Location: 1274-1684 bp Feature: domain Description: IstB_IS21 Location: 1277-1658 bp Feature: domain Description: IstB_IS21 Location: 1277-16 58 bp Feature: gene Location: 1739-2152 bp Ori: PAZ98538.1 Feature: domain Description: Y1_Tnp Location: 1793-2138 bp Feature: domain Description: Y1_Tnp Location: 1793-2138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IstB_IS21 (pfam01695), Y1_Tnp (pfam01797)

Seq: NSEP01000275.1 Escherichia coli strain JEONG-5650 NODE_92_length_14532_cov_25.9353_ID_183, whole genome shotgun sequence (14532 bp)
Overview 1 RT 1: 1-3080 bp Neighborhood of RT #1 [1, 3085] RVT_N RVT-GII PRK10472 PRK10739 Feature: gene Location: 1-676 bp Ori: PAZ95519.1 Feature: domain Description: RVT_N Location: 49-286 bp Feature: domain Description: RVT_N Location: 49-286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337 -67 3 bp Feature: gene Location: 1272-2435 bp Feature: domain Description: PRK10472 Location: 1275-2430 bp Feature: domain Description: PRK1047 2 Location: 127 5-2430 bp Feature: gene Location: 2492-3085 bp Ori: PAZ95510.1 Feature: domain Description: PRK10739 Location: 2495-3080 bp Feature: domain Description: PRK107 39 Location: 2495-3080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PRK10472 (low affinity gluconate transporter; Provisional), PRK10739 (YhgN family NAAT transporter)

Seq: NSEP01000402.1 Escherichia coli strain JEONG-5650 NODE_252_length_993_cov_125.544_ID_503, whole genome shotgun sequence (993 bp)
Overview 1 RT 1: 1-715 bp Neighborhood of RT #1 [1, 993] RVT-GII GIIM Feature: gene Location: 1-993 bp Ori: PAZ93894.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-430 bp Feature: domain Description: GIIM Note: maturase Location: 481-715 bp Feature: domain Description: GIIM Note: maturase Location: 48 1-715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NSEP01000212.1 Escherichia coli strain JEONG-5650 NODE_164_length_3439_cov_52.6673_ID_327, whole genome shotgun sequence (3439 bp)
Overview 1 RT 1: 141-3154 bp Neighborhood of RT #1 [141, 3183] PRK09738 RVT_N RVT-GII GIIM HNHc HNH Feature: gene Location: 141-320 bp Ori: PAZ97360.1 Feature: domain Description: PRK09738 Location: 144-297 bp Feature: domain Description: PRK09 738 Location: 144-29 7 bp Feature: gene Location: 885-2564 bp Ori: PAZ97362.1 Gene: ltrA Feature: domain Description: RVT_N Location: 936-1179 bp Feature: domain Description: RVT_N Location: 9 36-1179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1224-1866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1224-1866 bp Feature: domain Description: GIIM Note: maturase Location: 1920-2151 bp Feature: domain Description: GIIM Note: maturase Location: 19 20-2151 bp Feature: domain Description: HNHc Note: nucleases Location: 2364-2526 bp Feature: domain Description: HNHc Note: nucleases Location: 2364-2526 bp Feature: gene Location: 2729-2914 bp Feature: gene Location: 3055-3183 bp Feature: domain Description: HNH Note: nucleases Location: 3061-3154 bp Feature: domain Description: HNH Note: nucleases Location: 3061-3154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HNH (pfam01844)

Seq: NSEP01000136.1 Escherichia coli strain JEONG-5650 NODE_78_length_19007_cov_48.877_ID_155, whole genome shotgun sequence (19007 bp)
Overview 1 RT 1: 1-2886 bp Neighborhood of RT #1 [1, 2891] RVT-UG4 PrgH Feature: gene Location: 1-518 bp Feature: gene Location: 522-902 bp Ori: PAZ98326.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 525-678 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 525-678 bp Feature: gene Location: 984-1385 bp Feature: gene Location: 1689-2891 bp Ori: PAZ98328.1 Feature: domain Description: PrgH Location: 1749-2886 bp Feature: domain Description: PrgH Location: 1749-2886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PrgH (TIGR02554)