myRT

myRT report for GCA_002292425.1_ASM229242v1

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Seq: NSEX01000013.1 Mycobacterium avium strain FLAC0346 NODE_53_length_9376_cov_72.4333, whole genome shotgun sequence (9376 bp)
Overview 1 RT 1: 4123-9201 bp Neighborhood of RT #1 [4123, 9212] XerC HTH_38 Tra8 RVT-GII GIIM Tra8 HTH_17 Feature: gene Location: 4123-5250 bp Feature: domain Description: XerC Location: 4624-5005 bp Feature: domain Description: XerC Location: 4624-5005 bp Feature: gene Location: 5502-6302 bp Feature: domain Description: HTH_38 Location: 5565-5640 bp Feature: domain Description: HTH_38 Location: 5565-5640 bp Feature: domain Description: Tra8 Location: 5739-6303 bp Feature: domain Description: Tra8 Location: 5739-6303 bp Feature: gene Location: 6858-8369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7239-7923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7239-7923 bp Feature: domain Description: GIIM Note: maturase Location: 7998-8214 bp Feature: domain Description: GIIM Note: maturase Location: 7998-821 4 bp Feature: gene Location: 8485-8943 bp Feature: domain Description: Tra8 Location: 8497-8914 bp Feature: domain Description: Tra8 Location: 8497-891 4 bp Feature: gene Location: 9030-9212 bp Feature: domain Description: HTH_17 Location: 9033-9201 bp Feature: domain Description: HTH_1 7 Location: 9033-9201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), HTH_38 (pfam13936), Tra8 (COG2826), RVT-GII, GIIM (pfam08388), HTH_17 (pfam12728)

Seq: NSEX01000014.1 Mycobacterium avium strain FLAC0346 NODE_37_length_35821_cov_69.304, whole genome shotgun sequence (35821 bp)
Overview 1 RT 1: 26964-32807 bp Neighborhood of RT #1 [26964, 32827] CypX TetR_N TetR_C_35 RVT-GII GIIM MhpC Feature: gene Location: 26964-28265 bp Feature: domain Description: CypX Location: 27039-28254 bp Feature: domain Description: CypX Location: 2 7039-2 82 54 bp Feature: gene Location: 28353-28982 bp Feature: domain Description: TetR_N Location: 28410-28542 bp Feature: domain Description: TetR_N Location: 2 8410-2 8542 bp Feature: domain Description: TetR_C_35 Location: 28611-28944 bp Feature: domain Description: TetR_C_35 Location: 2 8611-2 8944 bp Feature: gene Location: 29690-31138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30008-30695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30008-30695 bp Feature: domain Description: GIIM Note: maturase Location: 30770-30965 bp Feature: domain Description: GIIM Note: maturase Location: 30770-30965 bp Feature: gene Location: 31668-31883 bp Feature: gene Location: 31931-32827 bp Feature: domain Description: MhpC Location: 31955-32807 bp Feature: domain Description: MhpC Location: 31955-32 807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CypX (COG2124), TetR_N (pfam00440), TetR_C_35 (pfam18556), RVT-GII, GIIM (pfam08388), MhpC (COG0596)