myRT

myRT report for GCA_002292435.1_ASM229243v1

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Seq: NSFA01000005.1 Mycobacterium avium strain FLAC0256 NODE_66_length_5925_cov_64.1685, whole genome shotgun sequence (58162 bp)
Overview 1 RT 1: 12746-18109 bp 2 RT 2: 49305-55148 bp Neighborhood of RT #1 [12746, 18108] XerC HTH_38 Tra8 RVT-GII GIIM Tra8 IS285 Neighborhood of RT #2 [49305, 55168] CypX TetR_N TetR_C_35 RVT-GII GIIM MhpC Feature: gene Location: 12746-13873 bp Feature: domain Description: XerC Location: 13247-13628 bp Feature: domain Description: XerC Location: 1 3247-1 3628 bp Feature: gene Location: 14146-14925 bp Feature: domain Description: HTH_38 Location: 14188-14263 bp Feature: domain Description: HTH_38 Location: 1 41 88-1 4263 bp Feature: domain Description: Tra8 Location: 14362-14926 bp Feature: domain Description: Tra8 Location: 1 4362-1 4926 bp Feature: gene Location: 15481-16992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15862-16546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5862-1 6546 bp Feature: domain Description: GIIM Note: maturase Location: 16621-16837 bp Feature: domain Description: GIIM Note: maturase Location: 1 6621 -1 6837 bp Feature: gene Location: 17108-17557 bp Feature: domain Description: Tra8 Location: 17120-17525 bp Feature: domain Description: Tra8 Location: 1 71 20-1 7525 bp Feature: gene Location: 17590-18108 bp Feature: domain Description: IS285 Location: 17659-18109 bp Feature: domain Description: IS285 Location: 1 7659-1 81 09 bp Feature: gene Location: 49305-50606 bp Feature: domain Description: CypX Location: 49380-50595 bp Feature: domain Description: CypX Location: 49380-50595 bp Feature: gene Location: 50694-51323 bp Feature: domain Description: TetR_N Location: 50751-50883 bp Feature: domain Description: TetR_N Location: 50751 -50883 bp Feature: domain Description: TetR_C_35 Location: 50952-51285 bp Feature: domain Description: TetR_C_35 Location: 50952-51 285 bp Feature: gene Location: 52031-53479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52349-53036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52349-53036 bp Feature: domain Description: GIIM Note: maturase Location: 53111-53306 bp Feature: domain Description: GIIM Note: maturase Location: 531 1 1 -53306 bp Feature: gene Location: 54009-54224 bp Feature: gene Location: 54272-55168 bp Feature: domain Description: MhpC Location: 54296-55148 bp Feature: domain Description: MhpC Location: 54296-551 48 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), HTH_38 (pfam13936), Tra8 (COG2826), RVT-GII, GIIM (pfam08388), IS285 (COG3328), CypX (COG2124), TetR_N (pfam00440), TetR_C_35 (pfam18556), MhpC (COG0596)

Seq: NSFA01000088.1 Mycobacterium avium strain FLAC0256 NODE_86_length_2188_cov_179.081, whole genome shotgun sequence (2188 bp)
Overview 1 RT 1: 119-2188 bp Neighborhood of RT #1 [119, 2188] RVT-GII GIIM Feature: gene Location: 119-1630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 500-1184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 500-1184 bp Feature: domain Description: GIIM Note: maturase Location: 1259-1475 bp Feature: domain Description: GIIM Note: maturase Location: 12 59-1475 bp Feature: gene Location: 2051-2188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)