myRT

myRT report for GCA_002292705.1_ASM229270v1

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Seq: NSEV01000016.1 Mycobacterium avium strain FLAC0371 NODE_55_length_6388_cov_67.2445, whole genome shotgun sequence (6388 bp)
Overview 1 RT 1: 19-2389 bp Neighborhood of RT #1 [19, 2391] RVT-GII GIIM Tra8 PRK07799 Feature: gene Location: 19-1530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-1 084 bp Feature: domain Description: GIIM Note: maturase Location: 1159-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 59-1 375 bp Feature: gene Location: 1646-2104 bp Feature: domain Description: Tra8 Location: 1658-2075 bp Feature: domain Description: Tra8 Location: 1 658-2075 bp Feature: gene Location: 2221-2391 bp Feature: domain Description: PRK07799 Location: 2230-2389 bp Feature: domain Description: PRK07799 Location: 2230-2389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-GII, GIIM (pfam08388), PRK07799 (crotonase/enoyl-CoA hydratase family protein)

Seq: NSEV01000014.1 Mycobacterium avium strain FLAC0371 NODE_36_length_19199_cov_43.4176, whole genome shotgun sequence (19199 bp)
Overview 1 RT 1: 10342-16185 bp Neighborhood of RT #1 [10342, 16205] CypX TetR_N TetR_C_35 RVT-GII GIIM MhpC Feature: gene Location: 10342-11643 bp Feature: domain Description: CypX Location: 10417-11632 bp Feature: domain Description: CypX Location: 10417-11632 bp Feature: gene Location: 11731-12360 bp Feature: domain Description: TetR_N Location: 11788-11920 bp Feature: domain Description: TetR_N Location: 11788-1192 0 bp Feature: domain Description: TetR_C_35 Location: 11989-12322 bp Feature: domain Description: TetR_C_35 Location: 11989-12 32 2 bp Feature: gene Location: 13068-14516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13386-14073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13386-14073 bp Feature: domain Description: GIIM Note: maturase Location: 14148-14343 bp Feature: domain Description: GIIM Note: maturase Location: 14148-14343 bp Feature: gene Location: 15046-15261 bp Feature: gene Location: 15309-16205 bp Feature: domain Description: MhpC Location: 15333-16185 bp Feature: domain Description: MhpC Location: 15333-16185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CypX (COG2124), TetR_N (pfam00440), TetR_C_35 (pfam18556), RVT-GII, GIIM (pfam08388), MhpC (COG0596)

Seq: NSEV01000005.1 Mycobacterium avium strain FLAC0371 NODE_116_length_677_cov_41.752, whole genome shotgun sequence (26090 bp)
Overview 1 RT 1: 14858-21715 bp Neighborhood of RT #1 [14858, 21744] Metal_hydrol DEDD_Tnp_IS110 Transposase_20 RVT_N RVT-GII Transposase_mut xerC xerC Feature: gene Location: 14858-15664 bp Feature: domain Description: Metal_hydrol Location: 14864-15590 bp Feature: domain Description: Metal_hydrol Location: 14864-15590 bp Feature: gene Location: 16542-17780 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 16554-17025 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 16554-17025 bp Feature: domain Description: Transposase_20 Location: 17367-17619 bp Feature: domain Description: Transposase_20 Location: 173 67-17619 bp Feature: gene Location: 18478-19440 bp Feature: RT Description: RVT_N Location: 18523-18760 bp Feature: RT Description: RVT_N Location: 18523 -18760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18820-19441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18820-19441 bp Feature: gene Location: 19562-20593 bp Feature: domain Description: Transposase_mut Location: 19613-20582 bp Feature: domain Description: Transposase_mut Location: 19613 -20582 bp Feature: gene Location: 20695-21744 bp Feature: domain Description: xerC Location: 20752-21067 bp Feature: domain Description: xerC Location: 20752-21067 bp Feature: domain Description: xerC Location: 21163-21715 bp Feature: domain Description: xerC Location: 21163 -21715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Metal_hydrol (pfam10118), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RVT_N (pfam13655), RVT-GII, Transposase_mut (pfam00872), xerC (PRK01287)