myRT

myRT report for GCA_002295115.1_ASM229511v1

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Seq: NSFV01000017.1 Mesorhizobium sp. WSM4311 contig_17, whole genome shotgun sequence (131048 bp)
Overview 1 RT 1: 980-7360 bp 2 RT 2: 10353-16629 bp Neighborhood of RT #1 [980, 7428] TraD TraD RVT-GII GIIM PRK13889 AlpA Neighborhood of RT #2 [10353, 16667] RVT-Retrons HTH_XRE Feature: gene Location: 980-1228 bp Feature: domain Description: TraD Location: 995-1190 bp Feature: domain Description: TraD Location: 995-1 1 90 bp Feature: gene Location: 1230-1556 bp Feature: domain Description: TraD Location: 1278-1452 bp Feature: domain Description: TraD Location: 1 278-1 452 bp Feature: gene Location: 1849-3375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2152-2869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 52-2869 bp Feature: domain Description: GIIM Note: maturase Location: 2947-3175 bp Feature: domain Description: GIIM Note: maturase Location: 2947-31 75 bp Feature: gene Location: 4010-7057 bp Feature: domain Description: PRK13889 Location: 4013-7055 bp Feature: domain Description: PRK1 3889 Location: 401 3-7055 bp Feature: gene Location: 7189-7428 bp Feature: domain Description: AlpA Location: 7192-7360 bp Feature: domain Description: AlpA Location: 71 92-7360 bp Feature: gene Location: 10353-12017 bp Feature: gene Location: 12049-13500 bp Feature: gene Location: 13524-14678 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13800-14409 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 3800-1 4409 bp Feature: gene Location: 14880-16040 bp Feature: gene Location: 16440-16667 bp Feature: domain Description: HTH_XRE Location: 16470-16629 bp Feature: domain Description: HTH_XRE Location: 1 6470-1 6629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraD (pfam06412), RVT-GII, GIIM (pfam08388), PRK13889 (conjugal transfer relaxase TraA; Provisional), AlpA (COG3311), RVT-Retrons, HTH_XRE (smart00530)