myRT

myRT report for GCA_002296115.1_ASM229611v1

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Seq: DBHH01000040.1 TPA_asm: Pseudomonadaceae bacterium UBA833 UBA833_contig_10932, whole genome shotgun sequence (179491 bp)
Overview 1 RT 1: 150455-159549 bp 2 RT 2: 171380-179022 bp Neighborhood of RT #1 [150455, 159638] COG4637 YeeA RVT-UG5 DUF4263 YeeA Neighborhood of RT #2 [171380, 179051] RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Feature: gene Location: 150455-151621 bp Feature: domain Description: COG4637 Location: 150461-151568 bp Feature: domain Description: COG4637 Location: 1 50461 -1 51 568 bp Feature: gene Location: 151639-153408 bp Feature: domain Description: YeeA Location: 151690-153271 bp Feature: domain Description: YeeA Location: 1 51 690-1 53271 bp Feature: gene Location: 153405-156425 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 153900-154371 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 53900-1 54371 bp Feature: gene Location: 156422-157666 bp Feature: domain Description: DUF4263 Location: 157082-157586 bp Feature: domain Description: DUF4263 Location: 1 57082-1 57586 bp Feature: gene Location: 157830-159638 bp Feature: domain Description: YeeA Location: 158412-159549 bp Feature: domain Description: YeeA Location: 1 5841 2-1 59549 bp Feature: gene Location: 171380-173887 bp Feature: gene Location: 173943-175043 bp Feature: gene Location: 175091-176887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175805-176495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 75805-1 76495 bp Feature: gene Location: 177100-178641 bp Feature: domain Description: LZ_Tnp_IS66 Location: 177226-177442 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 77226-1 77442 bp Feature: domain Description: zf-IS66 Location: 177469-177595 bp Feature: domain Description: zf-IS66 Location: 1 77469-1 77595 bp Feature: domain Description: DDE_Tnp_IS66 Location: 177637-178480 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 77637-1 78480 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 178501-178612 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 78501 -1 7861 2 bp Feature: gene Location: 178716-179051 bp Feature: domain Description: TnpB_IS66 Location: 178734-179022 bp Feature: domain Description: TnpB_IS66 Location: 1 78734-1 79022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4637 (Predicted ATPase ), YeeA (COG1002), RVT-UG5, DUF4263 (pfam14082), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717)