myRT

myRT report for GCA_002296625.1_ASM229662v1

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Seq: DBIO01000012.1 TPA_asm: Pseudomonas sp. UBA800 UBA800_contig_1899, whole genome shotgun sequence (190346 bp)
Overview 1 RT 1: 3-5404 bp Neighborhood of RT #1 [3, 5454] RVT-GII YkfC HNHc MrcA PRK07232 Feature: gene Location: 3-1478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117-753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 7-753 bp Feature: domain Description: YkfC Location: 951-1056 bp Feature: domain Description: YkfC Location: 951 -1 056 bp Feature: domain Description: HNHc Note: nucleases Location: 1266-1422 bp Feature: domain Description: HNHc Note: nucleases Location: 1 266-1 422 bp Feature: gene Location: 1532-4060 bp Feature: domain Description: MrcA Location: 1613-3986 bp Feature: domain Description: MrcA Location: 1 61 3-3986 bp Feature: gene Location: 4177-5454 bp Feature: domain Description: PRK07232 Location: 4195-5404 bp Feature: domain Description: PRK07232 Location: 41 95-5404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MrcA (COG5009), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: DBIO01000030.1 TPA_asm: Pseudomonas sp. UBA800 UBA800_contig_4991, whole genome shotgun sequence (11286 bp)
Overview 1 RT 1: 6447-10337 bp Neighborhood of RT #1 [6447, 10351] ASCH_yqfb_like ASCH_yqfb_like RVT-DGRs Avd_like DUF1566 Feature: gene Location: 6447-6953 bp Feature: gene Location: 7213-7935 bp Feature: domain Description: ASCH_yqfb_like Location: 7240-7318 bp Feature: domain Description: ASCH_yqfb_like Location: 72 40-7318 bp Feature: domain Description: ASCH_yqfb_like Location: 7615-7690 bp Feature: domain Description: ASCH_yqfb_like Location: 7615-7690 bp Feature: gene Location: 8017-9174 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8266-8950 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 82 66-8950 bp Feature: gene Location: 9373-9726 bp Feature: domain Description: Avd_like Location: 9400-9706 bp Feature: domain Description: Avd_like Location: 9400-9706 bp Feature: gene Location: 9779-10351 bp Feature: domain Description: DUF1566 Location: 10109-10337 bp Feature: domain Description: DUF1566 Location: 10109-10337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ASCH_yqfb_like (cd06552), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: DBIO01000071.1 TPA_asm: Pseudomonas sp. UBA800 UBA800_contig_963, whole genome shotgun sequence (14995 bp)
Overview 1 RT 1: 59-3066 bp 2 RT 2: 10871-14418 bp Neighborhood of RT #1 [59, 3066] RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #2 [10871, 14825] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM Feature: gene Location: 59-1855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773 -1463 bp Feature: gene Location: 1942-2484 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1954-2335 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1954-23 3 5 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2356-2467 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 23 56-2467 bp Feature: gene Location: 2839-3066 bp Feature: gene Location: 10871-11206 bp Feature: domain Description: TnpB_IS66 Location: 10889-11177 bp Feature: domain Description: TnpB_IS66 Location: 10889-11177 bp Feature: gene Location: 11270-12607 bp Feature: domain Description: LZ_Tnp_IS66 Location: 11411-11615 bp Feature: domain Description: LZ_Tnp_IS66 Location: 11411-11615 bp Feature: domain Description: zf-IS66 Location: 11645-11771 bp Feature: domain Description: zf-IS66 Location: 11645-11771 bp Feature: domain Description: DDE_Tnp_IS66 Location: 11813-12587 bp Feature: domain Description: DDE_Tnp_IS66 Location: 11813 -12587 bp Feature: gene Location: 13164-14825 bp Feature: RT Description: RVT_N Location: 13209-13452 bp Feature: RT Description: RVT_N Location: 13 209-13 452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13497-14133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 497-1413 3 bp Feature: domain Description: GIIM Note: maturase Location: 14193-14418 bp Feature: domain Description: GIIM Note: maturase Location: 14193 -14418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), RVT_N (pfam13655), GIIM (pfam08388)