myRT

myRT report for GCA_002297865.1_ASM229786v1

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Seq: DBKX01000295.1 TPA_asm: Lachnoclostridium sp. UBA739 UBA739_contig_12237, whole genome shotgun sequence (5185 bp)
Overview 1 RT 1: 406-5008 bp Neighborhood of RT #1 [406, 5008] RVT-DGRs RNase_HI_bacteria_like Feature: gene Location: 406-579 bp Feature: gene Location: 590-949 bp Feature: gene Location: 900-2000 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1080-1725 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 080-1 725 bp Feature: gene Location: 2499-3017 bp Feature: domain Description: RNase_HI_bacteria_like Location: 2598-3006 bp Feature: domain Description: RNase_HI_bacteria_like Location: 2598-3006 bp Feature: gene Location: 3920-5008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, RNase_HI_bacteria_like (cd09277)

Seq: DBKX01000371.1 TPA_asm: Lachnoclostridium sp. UBA739 UBA739_contig_13213, whole genome shotgun sequence (6553 bp)
Overview 1 RT 1: 2532-6439 bp Neighborhood of RT #1 [2532, 6439] RVT-UG28b Feature: gene Location: 2532-2822 bp Feature: gene Location: 3276-3866 bp Feature: gene Location: 3978-5684 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 4386-5112 bp Feature: RT Description: RVT-UG2 8b Note: UG2 8b RT Location: 4386-5112 bp Feature: gene Location: 5815-6105 bp Feature: gene Location: 6269-6439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28b

Seq: DBKX01000280.1 TPA_asm: Lachnoclostridium sp. UBA739 UBA739_contig_13824, whole genome shotgun sequence (3007 bp)
Overview 1 RT 1: 329-2361 bp Neighborhood of RT #1 [329, 2375] RVT-GII eno Feature: gene Location: 329-583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 359-578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 59-578 bp Feature: gene Location: 628-786 bp Feature: gene Location: 1056-2375 bp Feature: domain Description: eno Location: 1074-2361 bp Feature: domain Description: eno Location: 1074-23 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, eno (TIGR01060)

Seq: DBKX01000353.1 TPA_asm: Lachnoclostridium sp. UBA739 UBA739_contig_2921, whole genome shotgun sequence (5411 bp)
Overview 1 RT 1: 287-4942 bp Neighborhood of RT #1 [287, 5169] RVT-GII GIIM InsE HTH_28 HTH_28 PHA02517 DDE_Tnp_1 Feature: gene Location: 287-1315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 494-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 94 -1112 bp Feature: domain Description: GIIM Note: maturase Location: 1163-1313 bp Feature: domain Description: GIIM Note: maturase Location: 1163-1313 bp Feature: gene Location: 1899-3662 bp Feature: domain Description: InsE Location: 1911-2082 bp Feature: domain Description: InsE Location: 1911-2082 bp Feature: domain Description: HTH_28 Location: 2124-2235 bp Feature: domain Description: HTH_28 Location: 2124 -2235 bp Feature: domain Description: HTH_28 Location: 2301-2457 bp Feature: domain Description: HTH_28 Location: 2301-24 57 bp Feature: domain Description: PHA02517 Location: 2709-3510 bp Feature: domain Description: PHA02517 Location: 2709-3510 bp Feature: gene Location: 3853-5169 bp Feature: domain Description: DDE_Tnp_1 Location: 4198-4942 bp Feature: domain Description: DDE_Tnp_1 Location: 4 198-4 94 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsE (COG2963), HTH_28 (pfam13518), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1 (pfam01609)