myRT

myRT report for GCA_002300155.1_ASM230015v1

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Seq: NSDZ01000007.1 Rhodococcus sp. ACS1 Contig_7, whole genome shotgun sequence (630424 bp)
Overview 1 RT 1: 325351-332360 bp Neighborhood of RT #1 [325351, 332488] Nterm_IS4 DDE_Tnp_1 RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 AcrR Feature: gene Location: 325351-325631 bp Feature: gene Location: 326245-327450 bp Feature: domain Description: Nterm_IS4 Location: 326302-326593 bp Feature: domain Description: Nterm_IS4 Location: 326302-326593 bp Feature: domain Description: DDE_Tnp_1 Location: 326647-327322 bp Feature: domain Description: DDE_Tnp_1 Location: 326647-327322 bp Feature: gene Location: 328257-329522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328473-329133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328473-3291 33 bp Feature: domain Description: GIIM Note: maturase Location: 329214-329433 bp Feature: domain Description: GIIM Note: maturase Location: 32921 4-329433 bp Feature: gene Location: 330159-331397 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 330189-330654 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 3301 89-330654 bp Feature: domain Description: Transposase_20 Location: 330984-331236 bp Feature: domain Description: Transposase_20 Location: 330984-331 236 bp Feature: gene Location: 331823-332488 bp Feature: domain Description: AcrR Location: 331841-332360 bp Feature: domain Description: AcrR Location: 331 841 -332360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), AcrR (COG1309)

Seq: NSDZ01000018.1 Rhodococcus sp. ACS1 Contig_18, whole genome shotgun sequence (26118 bp)
Overview 1 RT 1: 103-5892 bp Neighborhood of RT #1 [103, 5892] DDE_Tnp_ISAZ013 RVT-GII Intron_maturas2 HNHc DDE_Tnp_ISAZ013 Feature: gene Location: 103-411 bp Feature: gene Location: 622-1200 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 907-1201 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 907-12 01 bp Feature: gene Location: 1741-3498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2002-2797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 002 -2 797 bp Feature: domain Description: Intron_maturas2 Location: 2914-3130 bp Feature: domain Description: Intron_maturas2 Location: 2 914-3130 bp Feature: domain Description: HNHc Note: nucleases Location: 3310-3478 bp Feature: domain Description: HNHc Note: nucleases Location: 3310-3478 bp Feature: gene Location: 3627-4271 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 3630-4248 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 3630-42 48 bp Feature: gene Location: 5401-5892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DDE_Tnp_ISAZ013 (pfam07592)

Seq: NSDZ01000006.1 Rhodococcus sp. ACS1 Contig_6, whole genome shotgun sequence (608515 bp)
Overview 1 RT 1: 194225-198639 bp Neighborhood of RT #1 [194225, 198716] GlnQ TIGR00004 RVT-Retrons FabG NfsA_FRP Feature: gene Location: 194225-194989 bp Feature: domain Description: GlnQ Location: 194240-194984 bp Feature: domain Description: GlnQ Location: 194240-194984 bp Feature: gene Location: 195047-195430 bp Feature: domain Description: TIGR00004 Location: 195059-195416 bp Feature: domain Description: TIGR00004 Location: 195059-195416 bp Feature: gene Location: 195704-196948 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 196124-196715 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 196124-196715 bp Feature: gene Location: 196977-197716 bp Feature: domain Description: FabG Location: 196992-197247 bp Feature: domain Description: FabG Location: 196992-197247 bp Feature: gene Location: 197889-198716 bp Feature: domain Description: NfsA_FRP Location: 197979-198639 bp Feature: domain Description: NfsA_FRP Location: 197979-19863 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnQ (COG1126), TIGR00004 (reactive intermediate/imine deaminase), RVT-Retrons, FabG (COG1028), NfsA_FRP