myRT

myRT report for GCA_002300485.1_ASM230048v1

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Seq: NSGZ01000001.1 Streptomyces sp. Ag82_O1-15 Ga0151190_11, whole genome shotgun sequence (11703113 bp)
Overview 1 RT 1: 198136-203358 bp 2 RT 2: 283622-287704 bp 3 RT 3: 505774-510244 bp 4 RT 4: 779728-784249 bp 5 RT 5: 1637325-1642156 bp 6 RT 6: 2078847-2083715 bp 7 RT 7: 11132387-11138685 bp 8 RT 8: 11657979-11661114 bp Neighborhood of RT #1 [198136, 203358] LysR DUF4096 RVT-GII Intron_maturas2 HNHc DDE_Tnp_1 Neighborhood of RT #2 [283622, 287704] HTH_32 DDE_3 DDE_Tnp_4 RVT-GII Transposase_20 Neighborhood of RT #3 [505774, 510244] SUKH_6 DDE_Tnp_1 RVT-GII Intron_maturas2 HNHc DUF4096 Neighborhood of RT #4 [779728, 784293] Cupin_7 RVT-GII KOG2565 Neighborhood of RT #5 [1637325, 1642179] DadA RVT-GII GIIM InsQ Neighborhood of RT #6 [2078847, 2083777] Transposase_20 DDE_Tnp_1 RVT-GII Intron_maturas2 HNHc DUF4096 LmbE Neighborhood of RT #7 [11132387, 11138705] CE2_N Beta_helix CE2_N XynE_like RVT-GII COG1233 PucR Neighborhood of RT #8 [11657979, 11661114] group_II_RT_mat RVT-GII GIIM Feature: gene Location: 198136-199020 bp Ori: PBC92513.1 Feature: domain Description: LysR Location: 198148-199009 bp Feature: domain Description: LysR Location: 1 981 48-1 99009 bp Feature: gene Location: 199528-199857 bp Feature: domain Description: DUF4096 Location: 199657-199843 bp Feature: domain Description: DUF4096 Location: 1 99657-1 99843 bp Feature: gene Location: 200383-202209 bp Ori: PBC92514.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 200644-201445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 200644-201 445 bp Feature: domain Description: Intron_maturas2 Location: 201562-201778 bp Feature: domain Description: Intron_maturas2 Location: 201 562-201 778 bp Feature: domain Description: HNHc Note: nucleases Location: 201973-202135 bp Feature: domain Description: HNHc Note: nucleases Location: 201 973-2021 35 bp Feature: gene Location: 202341-202883 bp Feature: domain Description: DDE_Tnp_1 Location: 202377-202821 bp Feature: domain Description: DDE_Tnp_1 Location: 202377-202821 bp Feature: gene Location: 202831-203358 bp Feature: gene Location: 283622-284719 bp Ori: PBC92582.1 Feature: domain Description: HTH_32 Location: 283808-284051 bp Feature: domain Description: HTH_32 Location: 283808-284051 bp Feature: domain Description: DDE_3 Location: 284171-284588 bp Feature: domain Description: DDE_3 Location: 2841 71 -284588 bp Feature: gene Location: 284852-285565 bp Ori: PBC92583.1 Feature: domain Description: DDE_Tnp_4 Location: 284999-285473 bp Feature: domain Description: DDE_Tnp_4 Location: 284999-285473 bp Feature: gene Location: 285573-286718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285834-286626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285834-286626 bp Feature: gene Location: 287199-287417 bp Feature: domain Description: Transposase_20 Location: 287259-287412 bp Feature: domain Description: Transposase_20 Location: 287259-28741 2 bp Feature: gene Location: 287417-287704 bp Feature: gene Location: 505774-506295 bp Ori: PBC92780.1 Feature: domain Description: SUKH_6 Location: 505852-506209 bp Feature: domain Description: SUKH_6 Location: 505852-506209 bp Feature: gene Location: 506312-506782 bp Feature: domain Description: DDE_Tnp_1 Location: 506342-506741 bp Feature: domain Description: DDE_Tnp_1 Location: 506342-506741 bp Feature: gene Location: 506974-508800 bp Ori: PBC92781.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 507235-508036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 507235-508036 bp Feature: domain Description: Intron_maturas2 Location: 508153-508369 bp Feature: domain Description: Intron_maturas2 Location: 5081 53-508369 bp Feature: domain Description: HNHc Note: nucleases Location: 508564-508726 bp Feature: domain Description: HNHc Note: nucleases Location: 508564-508726 bp Feature: gene Location: 509326-509655 bp Feature: domain Description: DUF4096 Location: 509455-509641 bp Feature: domain Description: DUF4096 Location: 509455-509641 bp Feature: gene Location: 509801-510244 bp Feature: gene Location: 779728-780066 bp Ori: PBC93018.1 Feature: domain Description: Cupin_7 Location: 779770-780046 bp Feature: domain Description: Cupin_7 Location: 779770-780046 bp Feature: gene Location: 780105-780458 bp Feature: gene Location: 780624-781250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 780630-781203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 780630-781 203 bp Feature: gene Location: 781336-781713 bp Feature: gene Location: 782968-784293 bp Ori: PBC93021.1 Feature: domain Description: KOG2565 Location: 783082-784249 bp Feature: domain Description: KOG2565 Location: 783082-784249 bp Feature: gene Location: 1637325-1638449 bp Ori: PBC93735.1 Feature: domain Description: DadA Location: 1637355-1638444 bp Feature: domain Description: DadA Location: 1 637355-1 638444 bp Feature: gene Location: 1638814-1639032 bp Feature: gene Location: 1639518-1640612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1639839-1640523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 639839-1 640523 bp Feature: gene Location: 1640611-1640937 bp Feature: domain Description: GIIM Note: maturase Location: 1640641-1640818 bp Feature: domain Description: GIIM Note: maturase Location: 1 640641 -1 64081 8 bp Feature: gene Location: 1641094-1642179 bp Ori: PBC93736.1 Feature: domain Description: InsQ Location: 1641178-1642156 bp Feature: domain Description: InsQ Location: 1 641 1 78-1 6421 56 bp Feature: gene Location: 2078847-2079425 bp Ori: PBC94147.1 Feature: domain Description: Transposase_20 Location: 2079009-2079264 bp Feature: domain Description: Transposase_20 Location: 2079009-2079264 bp Feature: gene Location: 2079447-2079761 bp Feature: domain Description: DDE_Tnp_1 Location: 2079453-2079762 bp Feature: domain Description: DDE_Tnp_1 Location: 2079453-2079762 bp Feature: gene Location: 2079923-2081749 bp Ori: PBC94148.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2080184-2080985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20801 84-2080985 bp Feature: domain Description: Intron_maturas2 Location: 2081102-2081318 bp Feature: domain Description: Intron_maturas2 Location: 2081 1 02-2081 31 8 bp Feature: domain Description: HNHc Note: nucleases Location: 2081513-2081675 bp Feature: domain Description: HNHc Note: nucleases Location: 2081 51 3-2081 675 bp Feature: gene Location: 2082275-2082481 bp Feature: domain Description: DUF4096 Location: 2082293-2082467 bp Feature: domain Description: DUF4096 Location: 2082293-2082467 bp Feature: gene Location: 2083013-2083777 bp Ori: PBC94149.1 Feature: domain Description: LmbE Location: 2083031-2083715 bp Feature: domain Description: LmbE Location: 2083031 -208371 5 bp Feature: gene Location: 11132387-11135014 bp Ori: PBD02006.1 Feature: domain Description: CE2_N Location: 11133425-11133629 bp Feature: domain Description: CE2_N Location: 1 1 1 33425-1 1 1 33629 bp Feature: domain Description: Beta_helix Location: 11133824-11134310 bp Feature: domain Description: Beta_helix Location: 1 1 1 33824-1 1 1 3431 0 bp Feature: domain Description: CE2_N Location: 11134754-11134973 bp Feature: domain Description: CE2_N Location: 1 1 1 34754-1 1 1 34973 bp Feature: gene Location: 11135077-11136336 bp Ori: PBD02007.1 Feature: domain Description: XynE_like Location: 11135713-11136319 bp Feature: domain Description: XynE_like Location: 1 1 1 3571 3-1 1 1 3631 9 bp Feature: gene Location: 11136498-11136947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11136501-11136939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 36501 -1 1 1 36939 bp Feature: gene Location: 11136952-11137449 bp Feature: domain Description: COG1233 Location: 11136970-11137444 bp Feature: domain Description: COG1 233 Location: 1 1 1 36970-1 1 1 37444 bp Feature: gene Location: 11137458-11138705 bp Ori: PBD02008.1 Feature: domain Description: PucR Location: 11137986-11138685 bp Feature: domain Description: PucR Location: 1 1 1 37986-1 1 1 38685 bp Feature: gene Location: 11657979-11658071 bp Feature: gene Location: 11658313-11658558 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 11658358-11658559 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 1 658358-1 1 658559 bp Feature: gene Location: 11658560-11659585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11658563-11659187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 658563-1 1 6591 87 bp Feature: domain Description: GIIM Note: maturase Location: 11659265-11659466 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 659265-1 1 659466 bp Feature: gene Location: 11659651-11660133 bp Feature: gene Location: 11660404-11661114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), DUF4096 (pfam13340), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DDE_Tnp_1 (pfam01609), HTH_32 (pfam13565), DDE_3 (pfam13358), DDE_Tnp_4 (pfam13359), Transposase_20 (pfam02371)
SUKH_6 (pfam14568), Cupin_7 (pfam12973), KOG2565 (KOG2565, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ), DadA (COG0665), GIIM (pfam08388), InsQ (COG0675), LmbE (COG2120), CE2_N (pfam17996), Beta_helix (pfam13229), XynE_like (cd01830)
COG1233 (Phytoene dehydrogenase-related protein ), PucR (pfam07905), group_II_RT_mat (TIGR04416)