myRT

myRT report for GCA_002301085.1_ASM230108v1

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Seq: MOPG01000005.1 Clostridioides difficile strain 5490-CF/ST37 5490_contig000005, whole genome shotgun sequence (257120 bp)
Overview 1 RT 1: 166167-178993 bp Neighborhood of RT #1 [166167, 178993] YodL LPD16 DUF4316 LPD25 RVT_N RVT-GII GIIM YtxK COG4646 KOG0390 Feature: gene Location: 166167-168917 bp Feature: domain Description: YodL Location: 166947-167241 bp Feature: domain Description: YodL Location: 1 66947-1 67241 bp Feature: domain Description: LPD16 Location: 167271-167493 bp Feature: domain Description: LPD1 6 Location: 1 67271 -1 67493 bp Feature: domain Description: DUF4316 Location: 167541-167628 bp Feature: domain Description: DUF431 6 Location: 1 67541 -1 67628 bp Feature: domain Description: LPD25 Location: 168234-168531 bp Feature: domain Description: LPD25 Location: 1 68234-1 68531 bp Feature: gene Location: 168999-169994 bp Feature: gene Location: 169995-171665 bp Feature: RT Description: RVT_N Location: 170040-170283 bp Feature: RT Description: RVT_N Location: 1 70040-1 70283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170328-170976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 70328-1 70976 bp Feature: domain Description: GIIM Note: maturase Location: 171030-171261 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 030-1 71 261 bp Feature: gene Location: 172244-178681 bp Feature: domain Description: YtxK Location: 174950-175553 bp Feature: domain Description: YtxK Location: 1 74950-1 75553 bp Feature: domain Description: COG4646 Location: 175619-178184 bp Feature: domain Description: COG4646 Location: 1 7561 9-1 781 84 bp Feature: domain Description: KOG0390 Location: 178535-178667 bp Feature: domain Description: KOG0390 Location: 1 78535-1 78667 bp Feature: gene Location: 178685-178993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YodL (pfam14191), LPD16 (pfam18830), DUF4316 (pfam14195), LPD25 (pfam18840), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family )