myRT

myRT report for GCA_002303085.1_ASM230308v1

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Seq: MPFR01000054.1 Clostridioides difficile strain 7494-E/ST6 7494_contig000054, whole genome shotgun sequence (29813 bp)
Overview 1 RT 1: 17896-22431 bp Neighborhood of RT #1 [17896, 22442] DUF3990 DUF3791 RVT-Retrons SmpB Feature: gene Location: 17896-18375 bp Feature: domain Description: DUF3990 Location: 17899-18355 bp Feature: domain Description: DUF3990 Location: 1 7899-1 8355 bp Feature: gene Location: 18375-18590 bp Feature: domain Description: DUF3791 Location: 18396-18579 bp Feature: domain Description: DUF3791 Location: 1 8396-1 8579 bp Feature: gene Location: 18928-20067 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19084-19648 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 9084-1 9648 bp Feature: gene Location: 20254-21135 bp Feature: gene Location: 21987-22442 bp Feature: domain Description: SmpB Location: 21999-22431 bp Feature: domain Description: SmpB Location: 21 999-22431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3990 (pfam13151), DUF3791 (pfam12668), RVT-Retrons, SmpB (pfam01668)

Seq: MPFR01000177.1 Clostridioides difficile strain 7494-E/ST6 7494_contig000177, whole genome shotgun sequence (1246 bp)
Overview 1 RT 1: 1-1211 bp Neighborhood of RT #1 [1, 1246] RVT-GII Spr Feature: gene Location: 1-407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268-403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 68-403 bp Feature: gene Location: 1028-1246 bp Feature: domain Description: Spr Location: 1034-1211 bp Feature: domain Description: Spr Location: 1034-12 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII