myRT

myRT report for GCA_002306945.1_ASM230694v1

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Seq: DBTH01000217.1 TPA_asm: Methylacidiphilaceae bacterium UBA1321 UBA1321_contig_71163, whole genome shotgun sequence (30622 bp)
Overview 1 RT 1: 3116-9385 bp Neighborhood of RT #1 [3116, 9480] Axe1 RVT-UG12 LspA Smc TPR TPR_11 Feature: gene Location: 3116-4447 bp Feature: domain Description: Axe1 Location: 3515-4364 bp Feature: domain Description: Axe1 Location: 351 5-4364 bp Feature: gene Location: 5012-5317 bp Feature: gene Location: 5384-6553 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 5720-6167 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 5720-61 67 bp Feature: gene Location: 6999-7505 bp Feature: domain Description: LspA Location: 7041-7482 bp Feature: domain Description: LspA Location: 7041 -7482 bp Feature: gene Location: 7579-9480 bp Feature: domain Description: Smc Location: 7960-8548 bp Feature: domain Description: Smc Location: 7960-8548 bp Feature: domain Description: TPR Location: 8947-9220 bp Feature: domain Description: TPR Location: 8947-9220 bp Feature: domain Description: TPR_11 Location: 9280-9385 bp Feature: domain Description: TPR_1 1 Location: 9280-9385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Axe1 (COG3458), RVT-UG12, LspA (COG0597), Smc (COG1196), TPR (smart00028), TPR_11 (pfam13414)

Seq: DBTH01000259.1 TPA_asm: Methylacidiphilaceae bacterium UBA1321 UBA1321_contig_9294, whole genome shotgun sequence (18758 bp)
Overview 1 RT 1: 3-5039 bp Neighborhood of RT #1 [3, 5047] Tar RVT-GII GIIM URO-D_like PRK10572 Feature: gene Location: 3-704 bp Feature: domain Description: Tar Location: 6-384 bp Feature: domain Description: Tar Location: 6-384 bp Feature: gene Location: 1019-2701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1670-2330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1670-2 330 bp Feature: domain Description: GIIM Note: maturase Location: 2402-2609 bp Feature: domain Description: GIIM Note: maturase Location: 2 402 -2 609 bp Feature: gene Location: 2903-4027 bp Feature: domain Description: URO-D_like Location: 3449-3974 bp Feature: domain Description: URO-D_like Location: 3449-3974 bp Feature: gene Location: 4241-5047 bp Feature: domain Description: PRK10572 Location: 4307-5039 bp Feature: domain Description: PRK10572 Location: 4307-5039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tar (COG0840), RVT-GII, GIIM (pfam08388), URO-D_like (cd03465), PRK10572 (arabinose operon transcriptional regulator AraC)