myRT

myRT report for GCA_002307175.1_ASM230717v1

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Seq: DBTS01000156.1 TPA_asm: Rhodocyclaceae bacterium UBA1310 UBA1310_contig_11966, whole genome shotgun sequence (37336 bp)
Overview 1 RT 1: 21297-27190 bp Neighborhood of RT #1 [21297, 27213] TPR TPR TPR GT9_LPS_heptosyltransferase PRK11251 RVT-Retrons PAP2_like_2 FdhE Feature: gene Location: 21297-23060 bp Feature: domain Description: TPR Location: 21321-21606 bp Feature: domain Description: TPR Location: 21 321 -21 606 bp Feature: domain Description: TPR Location: 21642-21909 bp Feature: domain Description: TPR Location: 21 642-21 909 bp Feature: domain Description: TPR Location: 21933-22191 bp Feature: domain Description: TPR Location: 21 933-221 91 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 22809-22983 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 22809-22983 bp Feature: gene Location: 23242-23547 bp Feature: domain Description: PRK11251 Location: 23266-23527 bp Feature: domain Description: PRK1 1 251 Location: 23266-23527 bp Feature: gene Location: 23954-25333 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24443-25100 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24443-251 00 bp Feature: gene Location: 25611-26201 bp Feature: domain Description: PAP2_like_2 Location: 25626-26049 bp Feature: domain Description: PAP2_like_2 Location: 25626-26049 bp Feature: gene Location: 26335-27213 bp Feature: domain Description: FdhE Location: 26359-27190 bp Feature: domain Description: FdhE Location: 26359-271 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), GT9_LPS_heptosyltransferase (cd03789), PRK11251 (osmotically-inducible lipoprotein OsmE), RVT-Retrons, PAP2_like_2 (cd03392), FdhE (TIGR01562)

Seq: DBTS01000106.1 TPA_asm: Rhodocyclaceae bacterium UBA1310 UBA1310_contig_4457, whole genome shotgun sequence (48585 bp)
Overview 1 RT 1: 17635-22851 bp Neighborhood of RT #1 [17635, 22859] rplM rpsI RVT-GII GIIM PRK13674 Dxs Feature: gene Location: 17635-18063 bp Feature: domain Description: rplM Location: 17638-18061 bp Feature: domain Description: rplM Location: 17638-18061 bp Feature: gene Location: 18079-18474 bp Feature: domain Description: rpsI Location: 18097-18472 bp Feature: domain Description: rpsI Location: 18097-18472 bp Feature: gene Location: 19218-20591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19551-20166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19551-2 0166 bp Feature: domain Description: GIIM Note: maturase Location: 20223-20448 bp Feature: domain Description: GIIM Note: maturase Location: 2 02 2 3-2 0448 bp Feature: gene Location: 20822-21754 bp Feature: domain Description: PRK13674 Location: 20960-21740 bp Feature: domain Description: PRK13674 Location: 2 0960-2 1740 bp Feature: gene Location: 22086-22859 bp Feature: domain Description: Dxs Location: 22092-22851 bp Feature: domain Description: Dxs Location: 2 2 092 -2 2 851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rplM (PRK09216), rpsI (PRK00132), RVT-GII, GIIM (pfam08388), PRK13674 (GTP cyclohydrolase I FolE2), Dxs (COG1154)

Seq: DBTS01000047.1 TPA_asm: Rhodocyclaceae bacterium UBA1310 UBA1310_contig_7333, whole genome shotgun sequence (37222 bp)
Overview 1 RT 1: 3327-7031 bp Neighborhood of RT #1 [3327, 7031] InsE RVT-GII Feature: gene Location: 3327-3632 bp Feature: domain Description: InsE Location: 3348-3540 bp Feature: domain Description: InsE Location: 3 3 48-3 540 bp Feature: gene Location: 3747-4172 bp Feature: gene Location: 4295-5563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4484-5174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4484-5174 bp Feature: gene Location: 5976-6149 bp Feature: gene Location: 6519-7031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII