myRT

myRT report for GCA_002307985.1_ASM230798v1

Download annotations/find similar RTs

Seq: DBUQ01000014.1 TPA_asm: Pseudomonas stutzeri isolate UBA1286 UBA1286_contig_157, whole genome shotgun sequence (29204 bp)
Overview 1 RT 1: 25688-28820 bp Neighborhood of RT #1 [25688, 29041] KOG3954 IS5 RVT_N RVT-GII GIIM Feature: gene Location: 25688-26617 bp Feature: domain Description: KOG3954 Location: 25694-26609 bp Feature: domain Description: KOG3954 Location: 25694-26609 bp Feature: gene Location: 27059-27424 bp Feature: domain Description: IS5 Location: 27071-27422 bp Feature: domain Description: IS5 Location: 27071 -27422 bp Feature: gene Location: 27536-29041 bp Feature: RT Description: RVT_N Location: 27617-27842 bp Feature: RT Description: RVT_N Location: 2761 7-27842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27893-28535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27893-28535 bp Feature: domain Description: GIIM Note: maturase Location: 28586-28820 bp Feature: domain Description: GIIM Note: maturase Location: 28586-28820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG3954 (KOG3954, Electron transfer flavoprotein, alpha subunit ), IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: DBUQ01000023.1 TPA_asm: Pseudomonas stutzeri isolate UBA1286 UBA1286_contig_53, whole genome shotgun sequence (132831 bp)
Overview 1 RT 1: 53075-60369 bp Neighborhood of RT #1 [53075, 60416] HmgA HppD RVT-GII GIIM SLC6sbd_Tyt1-Like GdhA Feature: gene Location: 53075-54214 bp Feature: domain Description: HmgA Location: 53078-54197 bp Feature: domain Description: HmgA Location: 53078-54197 bp Feature: gene Location: 54366-55451 bp Feature: domain Description: HppD Location: 54375-55443 bp Feature: domain Description: HppD Location: 54375-55443 bp Feature: gene Location: 55775-57100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56036-56651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56036-56651 bp Feature: domain Description: GIIM Note: maturase Location: 56705-56933 bp Feature: domain Description: GIIM Note: maturase Location: 56705-56933 bp Feature: gene Location: 57784-59193 bp Feature: domain Description: SLC6sbd_Tyt1-Like Location: 57868-59176 bp Feature: domain Description: SLC6sbd_Tyt1-Like Location: 57868-59176 bp Feature: gene Location: 59322-60416 bp Feature: domain Description: GdhA Location: 59343-60369 bp Feature: domain Description: GdhA Location: 59343-60369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HmgA (COG3508), HppD (COG3185), RVT-GII, GIIM (pfam08388), SLC6sbd_Tyt1-Like (cd10336), GdhA (COG0334)

Seq: DBUQ01000032.1 TPA_asm: Pseudomonas stutzeri isolate UBA1286 UBA1286_contig_9, whole genome shotgun sequence (148293 bp)
Overview 1 RT 1: 130349-134777 bp Neighborhood of RT #1 [130349, 134788] DDE_Tnp_1 RVT-GII GIIM IS5 PinE Feature: gene Location: 130349-130636 bp Feature: gene Location: 131141-131599 bp Feature: domain Description: DDE_Tnp_1 Location: 131144-131549 bp Feature: domain Description: DDE_Tnp_1 Location: 13 1144-13 1549 bp Feature: gene Location: 131671-132939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131884-132541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 1884-13 2541 bp Feature: domain Description: GIIM Note: maturase Location: 132619-132841 bp Feature: domain Description: GIIM Note: maturase Location: 13 2619-13 2841 bp Feature: gene Location: 133432-133971 bp Feature: domain Description: IS5 Location: 133621-133948 bp Feature: domain Description: IS5 Location: 13 3 621-13 3 948 bp Feature: gene Location: 134228-134788 bp Feature: domain Description: PinE Location: 134243-134777 bp Feature: domain Description: PinE Location: 13 4243 -13 4777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), IS5 (COG3039), PinE (COG1961)