myRT

myRT report for GCA_002310115.1_ASM231011v1

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Seq: DBYI01000085.1 TPA_asm: Ruminococcus flavefaciens isolate UBA1190 UBA1190_contig_12285, whole genome shotgun sequence (137269 bp)
Overview 1 RT 1: 118992-123166 bp Neighborhood of RT #1 [118992, 123183] Phage_int_SAM_3 INT_ICEBs1_C_like RVT-GII GIIM PRK11864 Feature: gene Location: 118992-120077 bp Feature: domain Description: Phage_int_SAM_3 Location: 119217-119358 bp Feature: domain Description: Phage_int_SAM_3 Location: 1 1 921 7-1 1 9358 bp Feature: domain Description: INT_ICEBs1_C_like Location: 119505-119976 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 1 1 9505-1 1 9976 bp Feature: gene Location: 120363-120542 bp Feature: gene Location: 121095-121739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121098-121362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 098-1 21 362 bp Feature: domain Description: GIIM Note: maturase Location: 121443-121662 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 443-1 21 662 bp Feature: gene Location: 121896-122036 bp Feature: gene Location: 122287-123183 bp Feature: domain Description: PRK11864 Location: 122311-123166 bp Feature: domain Description: PRK1 1 864 Location: 1 2231 1 -1 231 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), RVT-GII, GIIM (pfam08388), PRK11864 (3-methyl-2-oxobutanoate dehydrogenase subunit beta)

Seq: DBYI01000016.1 TPA_asm: Ruminococcus flavefaciens isolate UBA1190 UBA1190_contig_1888, whole genome shotgun sequence (170410 bp)
Overview 1 RT 1: 113914-118096 bp Neighborhood of RT #1 [113914, 118137] DacC RVT-GII MurNAc-LAA SH3_3 TyrA Feature: gene Location: 113914-115332 bp Feature: domain Description: DacC Location: 113932-115144 bp Feature: domain Description: DacC Location: 113932 -115144 bp Feature: gene Location: 115479-115622 bp Feature: gene Location: 115627-116163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115819-116155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115819-116155 bp Feature: gene Location: 116397-117134 bp Feature: domain Description: MurNAc-LAA Location: 116463-116904 bp Feature: domain Description: MurNAc-LAA Location: 116463-116904 bp Feature: domain Description: SH3_3 Location: 116976-117126 bp Feature: domain Description: SH3_3 Location: 116976-11712 6 bp Feature: gene Location: 117286-118137 bp Feature: domain Description: TyrA Location: 117289-118096 bp Feature: domain Description: TyrA Location: 1172 89-118096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DacC (COG1686), RVT-GII, MurNAc-LAA (cl02713), SH3_3 (pfam08239), TyrA (COG0287)

Seq: DBYI01000093.1 TPA_asm: Ruminococcus flavefaciens isolate UBA1190 UBA1190_contig_38825, whole genome shotgun sequence (16204 bp)
Overview 1 RT 1: 5232-10531 bp Neighborhood of RT #1 [5232, 10531] DUF3795 RVT-GII RVT-GII GIIM LRR_5 Dockerin_I M6dom_M6dom_M6dom_TIGR03296 Feature: gene Location: 5232-5630 bp Feature: domain Description: DUF3795 Location: 5247-5505 bp Feature: domain Description: DUF3 795 Location: 5247-5505 bp Feature: gene Location: 6012-6155 bp Feature: gene Location: 6142-6861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6352-6739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 52-673 9 bp Feature: gene Location: 7312-7980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7315-7522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 15-7522 bp Feature: domain Description: GIIM Note: maturase Location: 7582-7813 bp Feature: domain Description: GIIM Note: maturase Location: 7582-7813 bp Feature: gene Location: 8118-10184 bp Feature: domain Description: LRR_5 Location: 8169-8469 bp Feature: domain Description: LRR_5 Location: 8169-8469 bp Feature: domain Description: Dockerin_I Location: 8661-8826 bp Feature: domain Description: Dockerin_I Location: 8661-8826 bp Feature: domain Description: M6dom_M6dom_M6dom_TIGR03296 Location: 8919-9711 bp Feature: domain Description: M6dom_M6dom_M6dom_TIGR03 296 Location: 8919-9711 bp Feature: gene Location: 10238-10531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3795 (pfam12675), RVT-GII, GIIM (pfam08388), LRR_5 (pfam13306), Dockerin_I (cd14256), M6dom_M6dom_M6dom_TIGR03296