myRT

myRT report for GCA_002311535.1_ASM231153v1

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Seq: DCAP01000018.1 TPA_asm: Salegentibacter sp. UBA1130 UBA1130_contig_1962, whole genome shotgun sequence (68162 bp)
Overview 1 RT 1: 64407-68160 bp Neighborhood of RT #1 [64407, 68160] DHQS RVT-GII GIIM Feature: gene Location: 64407-65495 bp Feature: domain Description: DHQS Location: 64455-65469 bp Feature: domain Description: DHQS Location: 64455-65469 bp Feature: gene Location: 65557-65850 bp Feature: gene Location: 66094-67386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66313-66931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6631 3-66931 bp Feature: domain Description: GIIM Note: maturase Location: 66976-67207 bp Feature: domain Description: GIIM Note: maturase Location: 66976-67207 bp Feature: gene Location: 67467-67613 bp Feature: gene Location: 67915-68160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DHQS (pfam01959), RVT-GII, GIIM (pfam08388)

Seq: DCAP01000026.1 TPA_asm: Salegentibacter sp. UBA1130 UBA1130_contig_2306, whole genome shotgun sequence (42544 bp)
Overview 1 RT 1: 4079-8281 bp Neighborhood of RT #1 [4079, 8313] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 TnpB_IS66 Feature: gene Location: 4079-4588 bp Feature: gene Location: 4638-5399 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4647-5253 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4647-52 53 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5274-5382 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 52 74-5382 bp Feature: gene Location: 5502-6740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5715-6369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5715-6369 bp Feature: domain Description: GIIM Note: maturase Location: 6447-6666 bp Feature: domain Description: GIIM Note: maturase Location: 6447-6666 bp Feature: gene Location: 7252-7971 bp Feature: domain Description: COG3436 Location: 7498-7948 bp Feature: domain Description: COG3436 Location: 7498-7948 bp Feature: gene Location: 8014-8313 bp Feature: domain Description: TnpB_IS66 Location: 8017-8281 bp Feature: domain Description: TnpB_IS66 Location: 8017-82 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), TnpB_IS66 (pfam05717)

Seq: DCAP01000010.1 TPA_asm: Salegentibacter sp. UBA1130 UBA1130_contig_414, whole genome shotgun sequence (125238 bp)
Overview 1 RT 1: 81347-87165 bp Neighborhood of RT #1 [81347, 87170] truA Metallophos_2 RVT-GII GIIM DUF4293 rho Feature: gene Location: 81347-82090 bp Feature: domain Description: truA Location: 81350-82070 bp Feature: domain Description: truA Location: 813 50-82070 bp Feature: gene Location: 82205-82699 bp Feature: domain Description: Metallophos_2 Location: 82214-82652 bp Feature: domain Description: Metallophos_2 Location: 82214-82652 bp Feature: gene Location: 82999-84396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83335-83950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 3 3 5-83 950 bp Feature: domain Description: GIIM Note: maturase Location: 84004-84217 bp Feature: domain Description: GIIM Note: maturase Location: 84004-84217 bp Feature: gene Location: 84904-85422 bp Feature: domain Description: DUF4293 Location: 85018-85417 bp Feature: domain Description: DUF4293 Location: 85018-85417 bp Feature: gene Location: 85512-87170 bp Feature: domain Description: rho Location: 85521-87165 bp Feature: domain Description: rho Location: 85521-87165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT truA (PRK00021), Metallophos_2 (pfam12850), RVT-GII, GIIM (pfam08388), DUF4293 (pfam14126), rho (TIGR00767)

Seq: DCAP01000015.1 TPA_asm: Salegentibacter sp. UBA1130 UBA1130_contig_92, whole genome shotgun sequence (66130 bp)
Overview 1 RT 1: 2149-7855 bp Neighborhood of RT #1 [2149, 7857] TPR_19 TPR_19 VCBS VCBS VCBS FG-GAP VCBS UnbV_ASPIC RVT-GII GIIM KdpD KdpD OmpR Feature: gene Location: 2149-2370 bp Feature: gene Location: 2501-4702 bp Feature: domain Description: TPR_19 Location: 2648-2780 bp Feature: domain Description: TPR_19 Location: 264 8-2780 bp Feature: domain Description: TPR_19 Location: 2969-3071 bp Feature: domain Description: TPR_19 Location: 2969-3071 bp Feature: domain Description: VCBS Location: 3203-3395 bp Feature: domain Description: VCBS Location: 3203-3395 bp Feature: domain Description: VCBS Location: 3425-3569 bp Feature: domain Description: VCBS Location: 34 25-3569 bp Feature: domain Description: VCBS Location: 3719-3926 bp Feature: domain Description: VCBS Location: 3719-3926 bp Feature: domain Description: FG-GAP Location: 4106-4145 bp Feature: domain Description: FG-GAP Location: 4 106-4 14 5 bp Feature: domain Description: VCBS Location: 4181-4313 bp Feature: domain Description: VCBS Location: 4 181-4 313 bp Feature: domain Description: UnbV_ASPIC Location: 4433-4643 bp Feature: domain Description: UnbV_ASPIC Location: 4 4 33-4 64 3 bp Feature: gene Location: 4826-5794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4862-5411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 862-54 11 bp Feature: domain Description: GIIM Note: maturase Location: 5495-5711 bp Feature: domain Description: GIIM Note: maturase Location: 54 95-5711 bp Feature: gene Location: 6105-7187 bp Feature: domain Description: KdpD Location: 6135-6489 bp Feature: domain Description: KdpD Location: 6135-64 89 bp Feature: domain Description: KdpD Location: 6492-7173 bp Feature: domain Description: KdpD Location: 64 92-7173 bp Feature: gene Location: 7180-7857 bp Feature: domain Description: OmpR Location: 7195-7855 bp Feature: domain Description: OmpR Location: 7195-7855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_19 (pfam14559), VCBS (pfam13517), FG-GAP (pfam01839), UnbV_ASPIC (pfam07593), RVT-GII, GIIM (pfam08388), KdpD (pfam02702), OmpR (COG0745)