myRT

myRT report for GCA_002311635.1_ASM231163v1

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Seq: DBZJ01000040.1 TPA_asm: Syntrophaceae bacterium UBA1163 UBA1163_contig_12379, whole genome shotgun sequence (4457 bp)
Overview 1 RT 1: 796-4336 bp Neighborhood of RT #1 [796, 4341] RVT-GII GIIM TPR Feature: gene Location: 796-1116 bp Feature: gene Location: 1309-1644 bp Feature: gene Location: 1953-3263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2241-2889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2241 -2889 bp Feature: domain Description: GIIM Note: maturase Location: 2961-3159 bp Feature: domain Description: GIIM Note: maturase Location: 2961 -31 59 bp Feature: gene Location: 3365-3679 bp Feature: gene Location: 3925-4341 bp Feature: domain Description: TPR Location: 4090-4336 bp Feature: domain Description: TPR Location: 4090-4336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TPR (smart00028)

Seq: DBZJ01000203.1 TPA_asm: Syntrophaceae bacterium UBA1163 UBA1163_contig_17074, whole genome shotgun sequence (38259 bp)
Overview 1 RT 1: 33359-36741 bp Neighborhood of RT #1 [33359, 36741] HTH_XRE RVT-Retrons Feature: gene Location: 33359-33655 bp Feature: gene Location: 33693-34007 bp Feature: domain Description: HTH_XRE Location: 33705-33876 bp Feature: domain Description: HTH_XRE Location: 33705-33876 bp Feature: gene Location: 33994-34911 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34138-34684 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34138-34684 bp Feature: gene Location: 35391-35732 bp Feature: gene Location: 35899-36741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: DBZJ01000219.1 TPA_asm: Syntrophaceae bacterium UBA1163 UBA1163_contig_46684, whole genome shotgun sequence (17518 bp)
Overview 1 RT 1: 6074-12030 bp Neighborhood of RT #1 [6074, 12030] COG4447 COG4447 COG4447 HTH_32 RVT-GII DUF1329 Feature: gene Location: 6074-7087 bp Feature: domain Description: COG4447 Location: 6203-6428 bp Feature: domain Description: COG4447 Location: 6203 -6428 bp Feature: domain Description: COG4447 Location: 6449-6671 bp Feature: domain Description: COG4447 Location: 6449-6671 bp Feature: domain Description: COG4447 Location: 6728-7055 bp Feature: domain Description: COG4447 Location: 6728-7055 bp Feature: gene Location: 7365-7739 bp Feature: gene Location: 7871-8719 bp Feature: domain Description: HTH_32 Location: 8018-8180 bp Feature: domain Description: HTH_3 2 Location: 8018-8180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8333-8714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 3 3 -8714 bp Feature: gene Location: 8851-10317 bp Feature: domain Description: DUF1329 Location: 9253-10237 bp Feature: domain Description: DUF13 29 Location: 9253 -1023 7 bp Feature: gene Location: 10510-12030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4447 (Uncharacterized protein related to plant photosystem II stability/assembly factor ), HTH_32 (pfam13565), RVT-GII, DUF1329 (pfam07044)

Seq: DBZJ01000204.1 TPA_asm: Syntrophaceae bacterium UBA1163 UBA1163_contig_5809, whole genome shotgun sequence (24349 bp)
Overview 1 RT 1: 21672-23198 bp Neighborhood of RT #1 [21672, 23965] RVT-Retrons Feature: gene Location: 21672-21956 bp Feature: gene Location: 22129-22341 bp Feature: gene Location: 22439-23965 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22601-23198 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22601-23198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons