myRT

myRT report for GCA_002312175.1_ASM231217v1

Download annotations/find similar RTs

Seq: MWXP01000048.1 Pseudomonas aeruginosa strain 146 Assistante scaffold_47, whole genome shotgun sequence (23871 bp)
Overview 1 RT 1: 1-6348 bp Neighborhood of RT #1 [1, 6353] DEXHc_Snf RVT_N RVT-GII GIIM HNHc SF2_C_SNF umuC Feature: gene Location: 1-810 bp Feature: gene Location: 915-1940 bp Feature: domain Description: DEXHc_Snf Location: 1107-1353 bp Feature: domain Description: DEXHc_Snf Location: 1 1 07-1 353 bp Feature: gene Location: 2179-3918 bp Feature: RT Description: RVT_N Location: 2257-2494 bp Feature: RT Description: RVT_N Location: 2257-2494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2545-3196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2545-31 96 bp Feature: domain Description: GIIM Note: maturase Location: 3250-3481 bp Feature: domain Description: GIIM Note: maturase Location: 3250-3481 bp Feature: domain Description: HNHc Note: nucleases Location: 3715-3871 bp Feature: domain Description: HNHc Note: nucleases Location: 371 5-3871 bp Feature: gene Location: 4011-5117 bp Feature: domain Description: SF2_C_SNF Location: 4575-4953 bp Feature: domain Description: SF2_C_SNF Location: 4575-4953 bp Feature: gene Location: 5172-6353 bp Feature: domain Description: umuC Location: 5193-6348 bp Feature: domain Description: umuC Location: 51 93-6348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SF2_C_SNF (cd18793), umuC (PRK03609), DEXHc_Snf (cd17919)

Seq: MWXP01000017.1 Pseudomonas aeruginosa strain 146 Assistante scaffold_16, whole genome shotgun sequence (133798 bp)
Overview 1 RT 1: 127970-133633 bp Neighborhood of RT #1 [127970, 133798] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 127970-129514 bp Feature: domain Description: CHD Location: 128186-128600 bp Feature: domain Description: CHD Location: 12 8186-12 8600 bp Feature: domain Description: CHD Location: 128828-129317 bp Feature: domain Description: CHD Location: 12 882 8-12 9317 bp Feature: gene Location: 131033-131359 bp Feature: gene Location: 131509-132777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131722-132379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13172 2 -132 379 bp Feature: domain Description: GIIM Note: maturase Location: 132457-132679 bp Feature: domain Description: GIIM Note: maturase Location: 132 457-132 679 bp Feature: gene Location: 133297-133798 bp Feature: domain Description: DUF772 Location: 133438-133633 bp Feature: domain Description: DUF772 Location: 133438-133633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: MWXP01000003.1 Pseudomonas aeruginosa strain 146 Assistante scaffold_2, whole genome shotgun sequence (375239 bp)
Overview 1 RT 1: 291339-300484 bp 2 RT 2: 316743-324936 bp Neighborhood of RT #1 [291339, 300486] HipA_So_like RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [316743, 324950] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 291339-291416 bp Feature: gene Location: 291402-291719 bp Feature: domain Description: HipA_So_like Location: 291441-291681 bp Feature: domain Description: HipA_So_like Location: 291441-291681 bp Feature: gene Location: 292023-293708 bp Feature: RT Description: RVT_N Location: 292080-292320 bp Feature: RT Description: RVT_N Location: 292080-2923 20 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292368-293004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2923 68-293 004 bp Feature: domain Description: GIIM Note: maturase Location: 293058-293289 bp Feature: domain Description: GIIM Note: maturase Location: 293 058-293 289 bp Feature: domain Description: HNH Note: nucleases Location: 293541-293679 bp Feature: domain Description: HNH Note: nucleases Location: 293 541-293 679 bp Feature: gene Location: 294789-298526 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 294897-295554 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 294897-295554 bp Feature: domain Description: PRK09776 Location: 295767-296238 bp Feature: domain Description: PRK09776 Location: 295767-29623 8 bp Feature: domain Description: PAS Location: 296283-296820 bp Feature: domain Description: PAS Location: 296283 -296820 bp Feature: domain Description: PRK10060 Location: 296829-298476 bp Feature: domain Description: PRK10060 Location: 296829-298476 bp Feature: gene Location: 298633-300486 bp Feature: domain Description: PRK05658 Location: 298645-300484 bp Feature: domain Description: PRK05658 Location: 298645-3 00484 bp Feature: gene Location: 316743-318035 bp Feature: domain Description: PRK10770 Location: 316833-318027 bp Feature: domain Description: PRK10770 Location: 3 1683 3 -3 18027 bp Feature: gene Location: 318016-320817 bp Feature: domain Description: LptD Location: 318211-320803 bp Feature: domain Description: LptD Location: 3 18211-3 20803 bp Feature: gene Location: 320950-322662 bp Feature: RT Description: RVT_N Location: 321007-321250 bp Feature: RT Description: RVT_N Location: 3 21007-3 21250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321295-321931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 21295-3 2193 1 bp Feature: domain Description: YkfC Location: 322141-322291 bp Feature: domain Description: YkfC Location: 3 22141-3 22291 bp Feature: domain Description: HNH Note: nucleases Location: 322468-322606 bp Feature: domain Description: HNH Note: nucleases Location: 3 22468-3 22606 bp Feature: gene Location: 322849-323061 bp Feature: gene Location: 323934-324950 bp Feature: domain Description: COG3178 Location: 323937-324936 bp Feature: domain Description: COG3 178 Location: 3 23 93 7-3 2493 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipA_So_like (cd17809), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )