myRT

myRT report for GCA_002312195.1_ASM231219v1

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Seq: MWXQ01000004.1 Pseudomonas aeruginosa strain Chir_D-144 scaffold_3, whole genome shotgun sequence (375205 bp)
Overview 1 RT 1: 291305-300450 bp 2 RT 2: 316709-324902 bp Neighborhood of RT #1 [291305, 300452] HipA_So_like RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [316709, 324916] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 291305-291382 bp Feature: gene Location: 291368-291685 bp Feature: domain Description: HipA_So_like Location: 291407-291647 bp Feature: domain Description: HipA_So_like Location: 291 407-291 647 bp Feature: gene Location: 291989-293674 bp Feature: RT Description: RVT_N Location: 292046-292286 bp Feature: RT Description: RVT_N Location: 292046-292286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292334-292970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292334-292970 bp Feature: domain Description: GIIM Note: maturase Location: 293024-293255 bp Feature: domain Description: GIIM Note: maturase Location: 293024-293255 bp Feature: domain Description: HNH Note: nucleases Location: 293507-293645 bp Feature: domain Description: HNH Note: nucleases Location: 293507-293645 bp Feature: gene Location: 294755-298492 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 294863-295520 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 294863-295520 bp Feature: domain Description: PRK09776 Location: 295733-296204 bp Feature: domain Description: PRK09776 Location: 295733-296204 bp Feature: domain Description: PAS Location: 296249-296786 bp Feature: domain Description: PAS Location: 296249-296786 bp Feature: domain Description: PRK10060 Location: 296795-298442 bp Feature: domain Description: PRK1 0060 Location: 296795-298442 bp Feature: gene Location: 298599-300452 bp Feature: domain Description: PRK05658 Location: 298611-300450 bp Feature: domain Description: PRK05658 Location: 29861 1 -300450 bp Feature: gene Location: 316709-318001 bp Feature: domain Description: PRK10770 Location: 316799-317993 bp Feature: domain Description: PRK1 0770 Location: 31 6799-31 7993 bp Feature: gene Location: 317982-320783 bp Feature: domain Description: LptD Location: 318177-320769 bp Feature: domain Description: LptD Location: 31 81 77-320769 bp Feature: gene Location: 320916-322628 bp Feature: RT Description: RVT_N Location: 320973-321216 bp Feature: RT Description: RVT_N Location: 320973-321 21 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321261-321897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 261 -321 897 bp Feature: domain Description: YkfC Location: 322107-322257 bp Feature: domain Description: YkfC Location: 3221 07-322257 bp Feature: domain Description: HNH Note: nucleases Location: 322434-322572 bp Feature: domain Description: HNH Note: nucleases Location: 322434-322572 bp Feature: gene Location: 322815-323027 bp Feature: gene Location: 323900-324916 bp Feature: domain Description: COG3178 Location: 323903-324902 bp Feature: domain Description: COG31 78 Location: 323903-324902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipA_So_like (cd17809), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: MWXQ01000022.1 Pseudomonas aeruginosa strain Chir_D-144 scaffold_21, whole genome shotgun sequence (133969 bp)
Overview 1 RT 1: 128141-133804 bp Neighborhood of RT #1 [128141, 133969] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 128141-129685 bp Feature: domain Description: CHD Location: 128357-128771 bp Feature: domain Description: CHD Location: 12 8357-12 8771 bp Feature: domain Description: CHD Location: 128999-129488 bp Feature: domain Description: CHD Location: 12 8999-12 9488 bp Feature: gene Location: 131204-131530 bp Feature: gene Location: 131680-132948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131893-132550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131893-132 550 bp Feature: domain Description: GIIM Note: maturase Location: 132628-132850 bp Feature: domain Description: GIIM Note: maturase Location: 132 62 8-132 850 bp Feature: gene Location: 133468-133969 bp Feature: domain Description: DUF772 Location: 133609-133804 bp Feature: domain Description: DUF772 Location: 133609-133804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: MWXQ01000063.1 Pseudomonas aeruginosa strain Chir_D-144 scaffold_62, whole genome shotgun sequence (2423 bp)
Overview 1 RT 1: 88-1759 bp Neighborhood of RT #1 [88, 1806] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 88-1806 bp Feature: RT Description: RVT_N Location: 145-382 bp Feature: RT Description: RVT_N Location: 145-3 82 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 3 -1084 bp Feature: domain Description: GIIM Note: maturase Location: 1138-1369 bp Feature: domain Description: GIIM Note: maturase Location: 113 8-13 69 bp Feature: domain Description: HNHc Note: nucleases Location: 1603-1759 bp Feature: domain Description: HNHc Note: nucleases Location: 1603 -1759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)