myRT

myRT report for GCA_002312215.1_ASM231221v1

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Seq: MWXU01000064.1 Pseudomonas aeruginosa strain PPF-2 scaffold_63, whole genome shotgun sequence (2423 bp)
Overview 1 RT 1: 88-1759 bp Neighborhood of RT #1 [88, 1806] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 88-1806 bp Feature: RT Description: RVT_N Location: 145-382 bp Feature: RT Description: RVT_N Location: 1 45-382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1 084 bp Feature: domain Description: GIIM Note: maturase Location: 1138-1369 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 38-1 369 bp Feature: domain Description: HNHc Note: nucleases Location: 1603-1759 bp Feature: domain Description: HNHc Note: nucleases Location: 1 603-1 759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: MWXU01000020.1 Pseudomonas aeruginosa strain PPF-2 scaffold_19, whole genome shotgun sequence (134143 bp)
Overview 1 RT 1: 128372-133978 bp Neighborhood of RT #1 [128372, 134143] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 128372-129916 bp Feature: domain Description: CHD Location: 128588-129002 bp Feature: domain Description: CHD Location: 12 8588-12 9002 bp Feature: domain Description: CHD Location: 129230-129719 bp Feature: domain Description: CHD Location: 12 92 30-12 9719 bp Feature: gene Location: 131435-131761 bp Feature: gene Location: 131911-133179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132124-132781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 12 4-132 781 bp Feature: domain Description: GIIM Note: maturase Location: 132859-133081 bp Feature: domain Description: GIIM Note: maturase Location: 132 859-133081 bp Feature: gene Location: 133699-134143 bp Feature: domain Description: DUF772 Location: 133783-133978 bp Feature: domain Description: DUF772 Location: 133783-133978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: MWXU01000005.1 Pseudomonas aeruginosa strain PPF-2 scaffold_4, whole genome shotgun sequence (375185 bp)
Overview 1 RT 1: 291285-300430 bp 2 RT 2: 316689-324882 bp Neighborhood of RT #1 [291285, 300432] HipA_So_like RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [316689, 324896] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 291285-291362 bp Feature: gene Location: 291348-291665 bp Feature: domain Description: HipA_So_like Location: 291387-291627 bp Feature: domain Description: HipA_So_like Location: 2913 87-291627 bp Feature: gene Location: 291969-293654 bp Feature: RT Description: RVT_N Location: 292026-292266 bp Feature: RT Description: RVT_N Location: 292026-292266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292314-292950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2923 14-292950 bp Feature: domain Description: GIIM Note: maturase Location: 293004-293235 bp Feature: domain Description: GIIM Note: maturase Location: 293 004-293 23 5 bp Feature: domain Description: HNH Note: nucleases Location: 293487-293625 bp Feature: domain Description: HNH Note: nucleases Location: 293 487-293 625 bp Feature: gene Location: 294735-298472 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 294843-295500 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 294843 -295500 bp Feature: domain Description: PRK09776 Location: 295713-296184 bp Feature: domain Description: PRK09776 Location: 295713 -296184 bp Feature: domain Description: PAS Location: 296229-296766 bp Feature: domain Description: PAS Location: 296229-296766 bp Feature: domain Description: PRK10060 Location: 296775-298422 bp Feature: domain Description: PRK10060 Location: 296775-298422 bp Feature: gene Location: 298579-300432 bp Feature: domain Description: PRK05658 Location: 298591-300430 bp Feature: domain Description: PRK05658 Location: 298591-3 0043 0 bp Feature: gene Location: 316689-317981 bp Feature: domain Description: PRK10770 Location: 316779-317973 bp Feature: domain Description: PRK10770 Location: 3 16779-3 17973 bp Feature: gene Location: 317962-320763 bp Feature: domain Description: LptD Location: 318157-320749 bp Feature: domain Description: LptD Location: 3 18157-3 20749 bp Feature: gene Location: 320896-322608 bp Feature: RT Description: RVT_N Location: 320953-321196 bp Feature: RT Description: RVT_N Location: 3 20953 -3 21196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321241-321877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 21241-3 21877 bp Feature: domain Description: YkfC Location: 322087-322237 bp Feature: domain Description: YkfC Location: 3 22087-3 2223 7 bp Feature: domain Description: HNH Note: nucleases Location: 322414-322552 bp Feature: domain Description: HNH Note: nucleases Location: 3 22414-3 22552 bp Feature: gene Location: 322795-323007 bp Feature: gene Location: 323880-324896 bp Feature: domain Description: COG3178 Location: 323883-324882 bp Feature: domain Description: COG3 178 Location: 3 23 883 -3 24882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipA_So_like (cd17809), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )