myRT

myRT report for GCA_002312245.1_ASM231224v1

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Seq: MWXS01000004.1 Pseudomonas aeruginosa strain PPF-21 scaffold_3, whole genome shotgun sequence (375229 bp)
Overview 1 RT 1: 291329-300474 bp 2 RT 2: 316733-324926 bp Neighborhood of RT #1 [291329, 300476] HipA_So_like RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [316733, 324940] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 291329-291406 bp Feature: gene Location: 291392-291709 bp Feature: domain Description: HipA_So_like Location: 291431-291671 bp Feature: domain Description: HipA_So_like Location: 291 431 -291 671 bp Feature: gene Location: 292013-293698 bp Feature: RT Description: RVT_N Location: 292070-292310 bp Feature: RT Description: RVT_N Location: 292070-29231 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292358-292994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292358-292994 bp Feature: domain Description: GIIM Note: maturase Location: 293048-293279 bp Feature: domain Description: GIIM Note: maturase Location: 293048-293279 bp Feature: domain Description: HNH Note: nucleases Location: 293531-293669 bp Feature: domain Description: HNH Note: nucleases Location: 293531 -293669 bp Feature: gene Location: 294779-298516 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 294887-295544 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 294887-295544 bp Feature: domain Description: PRK09776 Location: 295757-296228 bp Feature: domain Description: PRK09776 Location: 295757-296228 bp Feature: domain Description: PAS Location: 296273-296810 bp Feature: domain Description: PAS Location: 296273-29681 0 bp Feature: domain Description: PRK10060 Location: 296819-298466 bp Feature: domain Description: PRK1 0060 Location: 29681 9-298466 bp Feature: gene Location: 298623-300476 bp Feature: domain Description: PRK05658 Location: 298635-300474 bp Feature: domain Description: PRK05658 Location: 298635-300474 bp Feature: gene Location: 316733-318025 bp Feature: domain Description: PRK10770 Location: 316823-318017 bp Feature: domain Description: PRK1 0770 Location: 31 6823-31 801 7 bp Feature: gene Location: 318006-320807 bp Feature: domain Description: LptD Location: 318201-320793 bp Feature: domain Description: LptD Location: 31 8201 -320793 bp Feature: gene Location: 320940-322652 bp Feature: RT Description: RVT_N Location: 320997-321240 bp Feature: RT Description: RVT_N Location: 320997-321 240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321285-321921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 285-321 921 bp Feature: domain Description: YkfC Location: 322131-322281 bp Feature: domain Description: YkfC Location: 3221 31 -322281 bp Feature: domain Description: HNH Note: nucleases Location: 322458-322596 bp Feature: domain Description: HNH Note: nucleases Location: 322458-322596 bp Feature: gene Location: 322839-323051 bp Feature: gene Location: 323924-324940 bp Feature: domain Description: COG3178 Location: 323927-324926 bp Feature: domain Description: COG31 78 Location: 323927-324926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipA_So_like (cd17809), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: MWXS01000016.1 Pseudomonas aeruginosa strain PPF-21 scaffold_15, whole genome shotgun sequence (134438 bp)
Overview 1 RT 1: 128610-134273 bp Neighborhood of RT #1 [128610, 134438] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 128610-130154 bp Feature: domain Description: CHD Location: 128826-129240 bp Feature: domain Description: CHD Location: 12 882 6-12 92 40 bp Feature: domain Description: CHD Location: 129468-129957 bp Feature: domain Description: CHD Location: 12 9468-12 9957 bp Feature: gene Location: 131673-131999 bp Feature: gene Location: 132149-133417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132362-133019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 362 -133019 bp Feature: domain Description: GIIM Note: maturase Location: 133097-133319 bp Feature: domain Description: GIIM Note: maturase Location: 133097-133319 bp Feature: gene Location: 133937-134438 bp Feature: domain Description: DUF772 Location: 134078-134273 bp Feature: domain Description: DUF772 Location: 134078-1342 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: MWXS01000079.1 Pseudomonas aeruginosa strain PPF-21 scaffold_78, whole genome shotgun sequence (2423 bp)
Overview 1 RT 1: 88-1759 bp Neighborhood of RT #1 [88, 1806] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 88-1806 bp Feature: RT Description: RVT_N Location: 145-382 bp Feature: RT Description: RVT_N Location: 145-3 82 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 3 -1084 bp Feature: domain Description: GIIM Note: maturase Location: 1138-1369 bp Feature: domain Description: GIIM Note: maturase Location: 113 8-13 69 bp Feature: domain Description: HNHc Note: nucleases Location: 1603-1759 bp Feature: domain Description: HNHc Note: nucleases Location: 1603 -1759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)