myRT

myRT report for GCA_002312375.1_ASM231237v1

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Seq: MWYG01000001.1 Pseudomonas aeruginosa strain 358 scaffold_0, whole genome shotgun sequence (896281 bp)
Overview 1 RT 1: 40673-50637 bp Neighborhood of RT #1 [40673, 50690] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH RMtype1_S_EcoKI-TRD1-CR1_like Feature: gene Location: 40673-42526 bp Feature: domain Description: PRK05658 Location: 40685-42524 bp Feature: domain Description: PRK05658 Location: 40685-42524 bp Feature: gene Location: 42633-46370 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 42741-43398 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 42741 -43398 bp Feature: domain Description: PRK09776 Location: 43611-44082 bp Feature: domain Description: PRK09776 Location: 4361 1 -44082 bp Feature: domain Description: PAS Location: 44154-44664 bp Feature: domain Description: PAS Location: 441 54-44664 bp Feature: domain Description: PRK10060 Location: 44673-46320 bp Feature: domain Description: PRK1 0060 Location: 44673-46320 bp Feature: gene Location: 47451-49136 bp Feature: RT Description: RVT_N Location: 47508-47748 bp Feature: RT Description: RVT_N Location: 47508-47748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47796-48432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47796-48432 bp Feature: domain Description: GIIM Note: maturase Location: 48486-48717 bp Feature: domain Description: GIIM Note: maturase Location: 48486-4871 7 bp Feature: domain Description: HNH Note: nucleases Location: 48969-49107 bp Feature: domain Description: HNH Note: nucleases Location: 48969-491 07 bp Feature: gene Location: 49491-49901 bp Feature: gene Location: 50109-50690 bp Feature: domain Description: RMtype1_S_EcoKI-TRD1-CR1_like Location: 50118-50637 bp Feature: domain Description: RMtype1 _S_EcoKI-TRD1 -CR1 _like Location: 501 1 8-50637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), RMtype1_S_EcoKI-TRD1-CR1_like (cd17252)