myRT

myRT report for GCA_002312585.1_ASM231258v1

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Seq: MWXR01000002.1 Pseudomonas aeruginosa strain PPF-7 scaffold_1, whole genome shotgun sequence (577860 bp)
Overview 1 RT 1: 567205-573813 bp Neighborhood of RT #1 [567205, 573896] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 567205-568749 bp Feature: domain Description: CHD Location: 567421-567835 bp Feature: domain Description: CHD Location: 567421 -567835 bp Feature: domain Description: CHD Location: 568063-568552 bp Feature: domain Description: CHD Location: 568063-568552 bp Feature: gene Location: 570268-570594 bp Feature: gene Location: 570744-572012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570957-571614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570957-571 61 4 bp Feature: domain Description: GIIM Note: maturase Location: 571692-571914 bp Feature: domain Description: GIIM Note: maturase Location: 571 692-571 91 4 bp Feature: gene Location: 572532-573033 bp Feature: domain Description: DUF772 Location: 572673-572868 bp Feature: domain Description: DUF772 Location: 572673-572868 bp Feature: gene Location: 573069-573896 bp Feature: domain Description: ABC_phnC Location: 573099-573813 bp Feature: domain Description: ABC_phnC Location: 573099-57381 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: MWXR01000031.1 Pseudomonas aeruginosa strain PPF-7 scaffold_30, whole genome shotgun sequence (54661 bp)
Overview 1 RT 1: 29440-35812 bp Neighborhood of RT #1 [29440, 35817] DEXHc_Snf RVT_N RVT-GII GIIM HNHc KOG0390 SF2_C_SNF umuC Feature: gene Location: 29440-29747 bp Feature: gene Location: 29884-30939 bp Feature: domain Description: DEXHc_Snf Location: 30103-30361 bp Feature: domain Description: DEXHc_Snf Location: 30103-30361 bp Feature: gene Location: 31536-33254 bp Feature: RT Description: RVT_N Location: 31593-31830 bp Feature: RT Description: RVT_N Location: 31593-31830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31881-32532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31881-32 532 bp Feature: domain Description: GIIM Note: maturase Location: 32586-32817 bp Feature: domain Description: GIIM Note: maturase Location: 32 586-32 817 bp Feature: domain Description: HNHc Note: nucleases Location: 33051-33207 bp Feature: domain Description: HNHc Note: nucleases Location: 33051-332 07 bp Feature: gene Location: 33337-34581 bp Feature: domain Description: KOG0390 Location: 33358-33478 bp Feature: domain Description: KOG0390 Location: 33358-33478 bp Feature: domain Description: SF2_C_SNF Location: 34039-34417 bp Feature: domain Description: SF2 _C_SNF Location: 34039-34417 bp Feature: gene Location: 34636-35817 bp Feature: domain Description: umuC Location: 34657-35812 bp Feature: domain Description: umuC Location: 34657-35812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), SF2_C_SNF (cd18793), umuC (PRK03609)

Seq: MWXR01000001.1 Pseudomonas aeruginosa strain PPF-7 scaffold_0, whole genome shotgun sequence (652858 bp)
Overview 1 RT 1: 568958-578103 bp 2 RT 2: 594362-602555 bp Neighborhood of RT #1 [568958, 578105] HipA_So_like RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [594362, 602569] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 568958-569035 bp Feature: gene Location: 569021-569338 bp Feature: domain Description: HipA_So_like Location: 569060-569300 bp Feature: domain Description: HipA_So_like Location: 569060-5693 00 bp Feature: gene Location: 569642-571327 bp Feature: RT Description: RVT_N Location: 569699-569939 bp Feature: RT Description: RVT_N Location: 569699-56993 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569987-570623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569987-570623 bp Feature: domain Description: GIIM Note: maturase Location: 570677-570908 bp Feature: domain Description: GIIM Note: maturase Location: 570677-570908 bp Feature: domain Description: HNH Note: nucleases Location: 571160-571298 bp Feature: domain Description: HNH Note: nucleases Location: 571160-571298 bp Feature: gene Location: 572408-576145 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 572516-573173 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 572516-573 173 bp Feature: domain Description: PRK09776 Location: 573386-573857 bp Feature: domain Description: PRK09776 Location: 573 3 86-573 857 bp Feature: domain Description: PAS Location: 573902-574439 bp Feature: domain Description: PAS Location: 573 902-57443 9 bp Feature: domain Description: PRK10060 Location: 574448-576095 bp Feature: domain Description: PRK10060 Location: 574448-576095 bp Feature: gene Location: 576252-578105 bp Feature: domain Description: PRK05658 Location: 576264-578103 bp Feature: domain Description: PRK05658 Location: 576264-578103 bp Feature: gene Location: 594362-595654 bp Feature: domain Description: PRK10770 Location: 594452-595646 bp Feature: domain Description: PRK10770 Location: 594452-595646 bp Feature: gene Location: 595635-598436 bp Feature: domain Description: LptD Location: 595830-598422 bp Feature: domain Description: LptD Location: 59583 0-598422 bp Feature: gene Location: 598569-600281 bp Feature: RT Description: RVT_N Location: 598626-598869 bp Feature: RT Description: RVT_N Location: 598626-598869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 598914-599550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 598914-599550 bp Feature: domain Description: YkfC Location: 599760-599910 bp Feature: domain Description: YkfC Location: 599760-599910 bp Feature: domain Description: HNH Note: nucleases Location: 600087-600225 bp Feature: domain Description: HNH Note: nucleases Location: 600087-600225 bp Feature: gene Location: 600468-600680 bp Feature: gene Location: 601553-602569 bp Feature: domain Description: COG3178 Location: 601556-602555 bp Feature: domain Description: COG3 178 Location: 601556-602555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipA_So_like (cd17809), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )