myRT

myRT report for GCA_002312625.1_ASM231262v1

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Seq: MWXX01000019.1 Pseudomonas aeruginosa strain PPF-13 scaffold_18, whole genome shotgun sequence (138372 bp)
Overview 1 RT 1: 25596-34308 bp Neighborhood of RT #1 [25596, 34328] SLC-NCS1sbd_CobB-like Porin_O_P RVT-GII GIIM Hydantoinase_B HyuA Feature: gene Location: 25596-26957 bp Feature: domain Description: SLC-NCS1sbd_CobB-like Location: 25653-26913 bp Feature: domain Description: SLC-NCS1 sbd_CobB-like Location: 25653-2691 3 bp Feature: gene Location: 27105-28283 bp Feature: domain Description: Porin_O_P Location: 27330-28167 bp Feature: domain Description: Porin_O_P Location: 27330-281 67 bp Feature: gene Location: 28783-30156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29140-29755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 40-29755 bp Feature: domain Description: GIIM Note: maturase Location: 29809-30037 bp Feature: domain Description: GIIM Note: maturase Location: 29809-30037 bp Feature: gene Location: 30457-32202 bp Feature: domain Description: Hydantoinase_B Location: 30472-32056 bp Feature: domain Description: Hydantoinase_B Location: 30472-32056 bp Feature: gene Location: 32238-34328 bp Feature: domain Description: HyuA Location: 32253-34308 bp Feature: domain Description: HyuA Location: 32253-34308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLC-NCS1sbd_CobB-like (cd11484), Porin_O_P (pfam07396), RVT-GII, GIIM (pfam08388), Hydantoinase_B (pfam02538), HyuA (COG0145)

Seq: MWXX01000017.1 Pseudomonas aeruginosa strain PPF-13 scaffold_16, whole genome shotgun sequence (147397 bp)
Overview 1 RT 1: 64266-72438 bp 2 RT 2: 88702-98967 bp Neighborhood of RT #1 [64266, 72446] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [88702, 98978] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 64266-65282 bp Feature: domain Description: COG3178 Location: 64269-65268 bp Feature: domain Description: COG3178 Location: 642 69-652 68 bp Feature: gene Location: 66155-66367 bp Feature: gene Location: 66554-68266 bp Feature: RT Description: RVT_N Location: 66611-66854 bp Feature: RT Description: RVT_N Location: 66611-66854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66899-67532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66899-67532 bp Feature: domain Description: YkfC Location: 67745-67895 bp Feature: domain Description: YkfC Location: 67745-67895 bp Feature: domain Description: HNH Note: nucleases Location: 68072-68210 bp Feature: domain Description: HNH Note: nucleases Location: 68072 -682 10 bp Feature: gene Location: 68399-71173 bp Feature: domain Description: LptD Location: 68594-71159 bp Feature: domain Description: LptD Location: 68594-71159 bp Feature: gene Location: 71154-72446 bp Feature: domain Description: PRK10770 Location: 71244-72438 bp Feature: domain Description: PRK10770 Location: 712 44-72 438 bp Feature: gene Location: 88702-90555 bp Feature: domain Description: PRK05658 Location: 88714-90553 bp Feature: domain Description: PRK05658 Location: 88714-90553 bp Feature: gene Location: 90662-94399 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90770-91427 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 90770-9142 7 bp Feature: domain Description: PRK09776 Location: 91640-92111 bp Feature: domain Description: PRK09776 Location: 91640-92 111 bp Feature: domain Description: PAS Location: 92168-92693 bp Feature: domain Description: PAS Location: 92 168-92 693 bp Feature: domain Description: PRK10060 Location: 92702-94349 bp Feature: domain Description: PRK10060 Location: 92 702 -94349 bp Feature: gene Location: 95480-97165 bp Feature: RT Description: RVT_N Location: 95537-95777 bp Feature: RT Description: RVT_N Location: 95537-95777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95825-96461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9582 5-96461 bp Feature: domain Description: GIIM Note: maturase Location: 96515-96746 bp Feature: domain Description: GIIM Note: maturase Location: 96515-96746 bp Feature: domain Description: HNH Note: nucleases Location: 96998-97136 bp Feature: domain Description: HNH Note: nucleases Location: 96998-97136 bp Feature: gene Location: 97491-97595 bp Feature: gene Location: 97857-98978 bp Feature: domain Description: COG3177 Location: 97875-98967 bp Feature: domain Description: COG3177 Location: 97875-98967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )