myRT

myRT report for GCA_002314055.1_ASM231405v1

Download annotations/find similar RTs

Seq: DCBP01000130.1 TPA_asm: Prevotella sp. UBA1104 UBA1104_contig_1229, whole genome shotgun sequence (23084 bp)
Overview 1 RT 1: 2-7674 bp Neighborhood of RT #1 [2, 7674] DUF4376 RVT-DGRs Feature: gene Location: 2-445 bp Feature: gene Location: 450-1025 bp Feature: domain Description: DUF4376 Location: 687-975 bp Feature: domain Description: DUF4376 Location: 687-975 bp Feature: gene Location: 1022-2794 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1667-2261 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 667-2261 bp Feature: gene Location: 2951-6514 bp Feature: gene Location: 6526-7674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4376 (pfam14301), RVT-DGRs

Seq: DCBP01000084.1 TPA_asm: Prevotella sp. UBA1104 UBA1104_contig_234, whole genome shotgun sequence (21553 bp)
Overview 1 RT 1: 19170-21466 bp Neighborhood of RT #1 [19170, 21466] RVT-Retrons Feature: gene Location: 19170-19973 bp Feature: gene Location: 19970-20284 bp Feature: gene Location: 20289-20510 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20307-20481 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 0307-2 0481 bp Feature: gene Location: 20494-20931 bp Feature: gene Location: 20867-21466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: DCBP01000108.1 TPA_asm: Prevotella sp. UBA1104 UBA1104_contig_3727, whole genome shotgun sequence (16757 bp)
Overview 1 RT 1: 8745-15909 bp Neighborhood of RT #1 [8745, 15909] TPR TPR TPR_2 TPR_12 TPR_12 CHAT RVT-AbiP2 ADP_ribosyl_GH Feature: gene Location: 8745-10109 bp Feature: domain Description: TPR Location: 8958-9261 bp Feature: domain Description: TPR Location: 8958-9261 bp Feature: domain Description: TPR Location: 9480-9912 bp Feature: domain Description: TPR Location: 9480-9912 bp Feature: domain Description: TPR_2 Location: 9960-10047 bp Feature: domain Description: TPR_2 Location: 9960-10047 bp Feature: gene Location: 10112-12673 bp Feature: domain Description: TPR_12 Location: 10355-10526 bp Feature: domain Description: TPR_12 Location: 103 55-10526 bp Feature: domain Description: TPR_12 Location: 10736-10919 bp Feature: domain Description: TPR_12 Location: 1073 6-10919 bp Feature: domain Description: CHAT Location: 11663-12665 bp Feature: domain Description: CHAT Location: 11663 -12665 bp Feature: gene Location: 12766-14484 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 13204-13660 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 13 204-13 660 bp Feature: gene Location: 14501-15454 bp Feature: domain Description: ADP_ribosyl_GH Location: 14540-15368 bp Feature: domain Description: ADP_ribosyl_GH Location: 14540-153 68 bp Feature: gene Location: 15676-15909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), TPR_2 (pfam07719), TPR_12 (pfam13424), CHAT (pfam12770), RVT-AbiP2, ADP_ribosyl_GH (pfam03747)

Seq: DCBP01000111.1 TPA_asm: Prevotella sp. UBA1104 UBA1104_contig_557, whole genome shotgun sequence (8511 bp)
Overview 1 RT 1: 3899-8287 bp Neighborhood of RT #1 [3899, 8287] RVT-GII GIIM recA Feature: gene Location: 3899-4048 bp Feature: gene Location: 4135-4773 bp Feature: gene Location: 4667-5584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4736-5138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 736-5138 bp Feature: domain Description: GIIM Note: maturase Location: 5192-5402 bp Feature: domain Description: GIIM Note: maturase Location: 5192-54 02 bp Feature: gene Location: 5736-6761 bp Feature: domain Description: recA Location: 5772-6750 bp Feature: domain Description: recA Location: 5772-6750 bp Feature: gene Location: 6935-8287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), recA (PRK09519)