myRT

myRT report for GCA_002316385.1_ASM231638v1

Download annotations/find similar RTs

Seq: DCDL01000049.1 TPA_asm: Clostridium sp. UBA1056 UBA1056_contig_1105, whole genome shotgun sequence (22666 bp)
Overview 1 RT 1: 16433-20208 bp Neighborhood of RT #1 [16433, 20225] RVT-GII CGGC AdaA Feature: gene Location: 16433-16567 bp Feature: gene Location: 16685-17509 bp Feature: gene Location: 17999-18808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18002-18452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8002-1 8452 bp Feature: gene Location: 19056-19376 bp Feature: domain Description: CGGC Location: 19065-19368 bp Feature: domain Description: CGGC Location: 1 9065-1 9368 bp Feature: gene Location: 19629-20225 bp Feature: domain Description: AdaA Location: 19662-20208 bp Feature: domain Description: AdaA Location: 1 9662-20208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, CGGC (smart01078), AdaA (COG2169)

Seq: DCDL01000039.1 TPA_asm: Clostridium sp. UBA1056 UBA1056_contig_223, whole genome shotgun sequence (66754 bp)
Overview 1 RT 1: 51324-55174 bp Neighborhood of RT #1 [51324, 55215] EEP RVT-GII DDE_Tnp_IS66_C cztS_silS_copS Feature: gene Location: 51324-52139 bp Feature: domain Description: EEP Location: 51405-52101 bp Feature: domain Description: EEP Location: 51405-52 101 bp Feature: gene Location: 52373-52537 bp Feature: gene Location: 53077-53262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53092-53248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53092 -532 48 bp Feature: gene Location: 53950-54126 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 54007-54124 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 54007-5412 4 bp Feature: gene Location: 54976-55215 bp Feature: domain Description: cztS_silS_copS Location: 54991-55174 bp Feature: domain Description: cztS_silS_copS Location: 54991-55174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EEP (cl00490), RVT-GII, DDE_Tnp_IS66_C (pfam13817), cztS_silS_copS (TIGR01386)

Seq: DCDL01000054.1 TPA_asm: Clostridium sp. UBA1056 UBA1056_contig_82, whole genome shotgun sequence (183773 bp)
Overview 1 RT 1: 52376-60819 bp Neighborhood of RT #1 [52376, 60827] RVT-Retrons SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Feature: gene Location: 52376-55315 bp Feature: gene Location: 55315-57123 bp Feature: gene Location: 57120-58628 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57756-58404 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57756-58404 bp Feature: gene Location: 59102-59278 bp Feature: gene Location: 59271-60827 bp Feature: domain Description: SR_TndX_transposase Location: 59295-59724 bp Feature: domain Description: SR_TndX_transposase Location: 59295-59724 bp Feature: domain Description: Recombinase Location: 59847-60189 bp Feature: domain Description: Recombinase Location: 59847-60189 bp Feature: domain Description: Zn_ribbon_recom Location: 60231-60393 bp Feature: domain Description: Zn_ribbon_recom Location: 6023 1-603 93 bp Feature: domain Description: DUF4368 Location: 60681-60819 bp Feature: domain Description: DUF43 68 Location: 60681-60819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287)

Seq: DCDL01000060.1 TPA_asm: Clostridium sp. UBA1056 UBA1056_contig_84, whole genome shotgun sequence (124494 bp)
Overview 1 RT 1: 44289-48133 bp Neighborhood of RT #1 [44289, 48180] AmpC DUF3784 RVT-GII Acyl_transf_3 Phage_holin_4_1 Feature: gene Location: 44289-44447 bp Feature: domain Description: AmpC Location: 44331-44406 bp Feature: domain Description: AmpC Location: 4 4 331-4 4 4 06 bp Feature: gene Location: 44781-45140 bp Feature: domain Description: DUF3784 Location: 44805-45099 bp Feature: domain Description: DUF3784 Location: 4 4 805-4 5099 bp Feature: gene Location: 45956-46426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46199-46295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 6199-4 6295 bp Feature: gene Location: 46641-47693 bp Feature: domain Description: Acyl_transf_3 Location: 46695-47622 bp Feature: domain Description: Acyl_transf_3 Location: 4 6695-4 7622 bp Feature: gene Location: 47890-48180 bp Feature: domain Description: Phage_holin_4_1 Location: 47899-48133 bp Feature: domain Description: Phage_holin_4 _1 Location: 4 7899-4 8133 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AmpC (COG1680), DUF3784 (pfam12650), RVT-GII, Acyl_transf_3 (pfam01757), Phage_holin_4_1 (pfam05105)