myRT

myRT report for GCA_002316705.1_ASM231670v1

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Seq: DCEA01000018.1 TPA_asm: Syntrophomonas sp. UBA1041 UBA1041_contig_1484, whole genome shotgun sequence (48851 bp)
Overview 1 RT 1: 1-2981 bp Neighborhood of RT #1 [1, 3631] RVT-GII GIIM DUF2154 DUF4153 Feature: gene Location: 1-768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-31 9 bp Feature: domain Description: GIIM Note: maturase Location: 379-601 bp Feature: domain Description: GIIM Note: maturase Location: 379-601 bp Feature: gene Location: 929-1687 bp Feature: domain Description: DUF2154 Location: 1346-1679 bp Feature: domain Description: DUF21 54 Location: 1 346-1 679 bp Feature: gene Location: 1832-3631 bp Feature: domain Description: DUF4153 Location: 2309-2981 bp Feature: domain Description: DUF41 53 Location: 2309-2981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF2154 (pfam09922), DUF4153 (pfam13687)

Seq: DCEA01000032.1 TPA_asm: Syntrophomonas sp. UBA1041 UBA1041_contig_15071, whole genome shotgun sequence (58558 bp)
Overview 1 RT 1: 29697-35694 bp Neighborhood of RT #1 [29697, 35694] KU_like F420_ligase RVT-GII Feature: gene Location: 29697-30590 bp Feature: domain Description: KU_like Location: 29745-30495 bp Feature: domain Description: KU_like Location: 2 9745-30495 bp Feature: gene Location: 30717-31907 bp Feature: domain Description: F420_ligase Location: 30768-31893 bp Feature: domain Description: F42 0_ligase Location: 30768-31893 bp Feature: gene Location: 32688-33266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32943-33249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 943-332 49 bp Feature: gene Location: 34272-35123 bp Feature: gene Location: 35218-35694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KU_like (cd00789), F420_ligase (pfam01996), RVT-GII

Seq: DCEA01000066.1 TPA_asm: Syntrophomonas sp. UBA1041 UBA1041_contig_2645, whole genome shotgun sequence (63125 bp)
Overview 1 RT 1: 27282-32685 bp Neighborhood of RT #1 [27282, 32685] PRK13357 RVT-GII GIIM DrsE_2 Feature: gene Location: 27282-28352 bp Feature: domain Description: PRK13357 Location: 27294-28350 bp Feature: domain Description: PRK13 3 57 Location: 27294-283 50 bp Feature: gene Location: 28510-29496 bp Feature: gene Location: 30272-31522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30467-31085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0467-3 1085 bp Feature: domain Description: GIIM Note: maturase Location: 31136-31367 bp Feature: domain Description: GIIM Note: maturase Location: 3 113 6-3 13 67 bp Feature: gene Location: 31627-32106 bp Feature: domain Description: DrsE_2 Location: 31645-32101 bp Feature: domain Description: DrsE_2 Location: 3 1645-3 2101 bp Feature: gene Location: 32542-32685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13357 (branched-chain amino acid aminotransferase; Provisional), RVT-GII, GIIM (pfam08388), DrsE_2 (pfam13686)

Seq: DCEA01000003.1 TPA_asm: Syntrophomonas sp. UBA1041 UBA1041_contig_4824, whole genome shotgun sequence (131910 bp)
Overview 1 RT 1: 75319-79995 bp Neighborhood of RT #1 [75319, 80003] P-II Hrd RVT-UG7 WecB Feature: gene Location: 75319-75630 bp Feature: domain Description: P-II Location: 75346-75622 bp Feature: domain Description: P-II Location: 7534 6-75622 bp Feature: gene Location: 75719-76252 bp Feature: domain Description: Hrd Location: 75881-76091 bp Feature: domain Description: Hrd Location: 75881-76091 bp Feature: gene Location: 76474-78045 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 76885-77284 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 76885-77284 bp Feature: gene Location: 78110-78361 bp Feature: gene Location: 78867-80003 bp Feature: domain Description: WecB Location: 78885-79995 bp Feature: domain Description: WecB Location: 78885-79995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P-II (smart00938), Hrd (LOAD_Hrd), RVT-UG7, WecB (COG0381)