myRT

myRT report for GCA_002317635.1_ASM231763v1

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Seq: NSBN01000076.1 Escherichia coli strain ECO3347 ECO3347-4R_contig_76, whole genome shotgun sequence (7306 bp)
Overview 1 RT 1: 2748-6390 bp Neighborhood of RT #1 [2748, 6515] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2748-2867 bp Feature: gene Location: 3012-3187 bp Feature: gene Location: 3924-5591 bp Ori: PBO41746.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3972-4209 bp Feature: domain Description: RVT_N Location: 3972-4209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4260-4902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4260-4902 bp Feature: domain Description: GIIM Note: maturase Location: 4953-5187 bp Feature: domain Description: GIIM Note: maturase Location: 4953-51 87 bp Feature: domain Description: HNHc Note: nucleases Location: 5397-5556 bp Feature: domain Description: HNHc Note: nucleases Location: 5397-5556 bp Feature: gene Location: 5905-6096 bp Feature: gene Location: 6093-6515 bp Ori: PBO41748.1 Feature: domain Description: DUF1380 Location: 6096-6390 bp Feature: domain Description: DUF1 380 Location: 6096-6390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: NSBN01000001.1 Escherichia coli strain ECO3347 ECO3347-4R_contig_1, whole genome shotgun sequence (110790 bp)
Overview 1 RT 1: 45460-51450 bp Neighborhood of RT #1 [45460, 51485] Psu RVT-UG7 PRK09692 proA Feature: gene Location: 45460-46032 bp Ori: PBO56325.1 Feature: domain Description: Psu Location: 45478-46015 bp Feature: domain Description: Psu Location: 45478-46015 bp Feature: gene Location: 46335-47075 bp Feature: gene Location: 47072-48700 bp Ori: PBO56327.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47480-47909 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47480-47909 bp Feature: gene Location: 48693-49877 bp Ori: PBO56328.1 Feature: domain Description: PRK09692 Location: 48699-49854 bp Feature: domain Description: PRK09692 Location: 48699-49854 bp Feature: gene Location: 50232-51485 bp Ori: PBO56329.1 Gene: proA Feature: domain Description: proA Location: 50259-51450 bp Feature: domain Description: proA Location: 502 59-51450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), proA (TIGR00407)