myRT

myRT report for GCA_002317645.1_ASM231764v1

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Seq: NSBQ01000081.1 Escherichia coli strain ECO3347 ECO3347-2S-2_contig_81, whole genome shotgun sequence (7304 bp)
Overview 1 RT 1: 2747-6389 bp Neighborhood of RT #1 [2747, 6514] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2747-2866 bp Feature: gene Location: 3011-3186 bp Feature: gene Location: 3923-5590 bp Ori: PBO57823.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3971-4208 bp Feature: domain Description: RVT_N Location: 3971 -4208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4259-4901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4259-4901 bp Feature: domain Description: GIIM Note: maturase Location: 4952-5186 bp Feature: domain Description: GIIM Note: maturase Location: 4952-51 86 bp Feature: domain Description: HNHc Note: nucleases Location: 5396-5555 bp Feature: domain Description: HNHc Note: nucleases Location: 5396-5555 bp Feature: gene Location: 5904-6095 bp Feature: gene Location: 6092-6514 bp Ori: PBO57825.1 Feature: domain Description: DUF1380 Location: 6095-6389 bp Feature: domain Description: DUF1 380 Location: 6095-6389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: NSBQ01000032.1 Escherichia coli strain ECO3347 ECO3347-2S-2_contig_32, whole genome shotgun sequence (108813 bp)
Overview 1 RT 1: 45536-51526 bp Neighborhood of RT #1 [45536, 51561] Psu RVT-UG7 PRK09692 proA Feature: gene Location: 45536-46108 bp Ori: PBO65617.1 Feature: domain Description: Psu Location: 45554-46091 bp Feature: domain Description: Psu Location: 45554-46091 bp Feature: gene Location: 46411-47151 bp Feature: gene Location: 47148-48776 bp Ori: PBO65619.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47556-47985 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47556-47985 bp Feature: gene Location: 48769-49953 bp Ori: PBO65620.1 Feature: domain Description: PRK09692 Location: 48775-49930 bp Feature: domain Description: PRK09692 Location: 48775-49930 bp Feature: gene Location: 50308-51561 bp Ori: PBO65621.1 Gene: proA Feature: domain Description: proA Location: 50335-51526 bp Feature: domain Description: proA Location: 50335-5152 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), proA (TIGR00407)