myRT

myRT report for GCA_002317655.1_ASM231765v1

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Seq: NSBP01000072.1 Escherichia coli strain ECO3347 ECO3347-4S-1_contig_72, whole genome shotgun sequence (7304 bp)
Overview 1 RT 1: 2747-6389 bp Neighborhood of RT #1 [2747, 6514] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2747-2866 bp Feature: gene Location: 3011-3186 bp Feature: gene Location: 3923-5590 bp Ori: PBO56775.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3971-4208 bp Feature: domain Description: RVT_N Location: 3971 -4208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4259-4901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4259-4901 bp Feature: domain Description: GIIM Note: maturase Location: 4952-5186 bp Feature: domain Description: GIIM Note: maturase Location: 4952-51 86 bp Feature: domain Description: HNHc Note: nucleases Location: 5396-5555 bp Feature: domain Description: HNHc Note: nucleases Location: 5396-5555 bp Feature: gene Location: 5904-6095 bp Feature: gene Location: 6092-6514 bp Ori: PBO56777.1 Feature: domain Description: DUF1380 Location: 6095-6389 bp Feature: domain Description: DUF1 380 Location: 6095-6389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: NSBP01000019.1 Escherichia coli strain ECO3347 ECO3347-4S-1_contig_19, whole genome shotgun sequence (110871 bp)
Overview 1 RT 1: 59305-65313 bp Neighborhood of RT #1 [59305, 65330] proA PRK09692 RVT-UG7 Psu Feature: gene Location: 59305-60558 bp Ori: PBO64611.1 Gene: proA Feature: domain Description: proA Location: 59332-60523 bp Feature: domain Description: proA Location: 59332 -6052 3 bp Feature: gene Location: 60913-62097 bp Ori: PBO64612.1 Feature: domain Description: PRK09692 Location: 60919-62074 bp Feature: domain Description: PRK09692 Location: 60919-62 074 bp Feature: gene Location: 62090-63718 bp Ori: PBO64613.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 62498-62927 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 62 498-62 92 7 bp Feature: gene Location: 63715-64455 bp Feature: gene Location: 64758-65330 bp Ori: PBO64615.1 Feature: domain Description: Psu Location: 64776-65313 bp Feature: domain Description: Psu Location: 64776-65313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)