myRT

myRT report for GCA_002317695.1_ASM231769v1

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Seq: NSBM01000020.1 Escherichia coli strain ECO3347 ECO3347-8R-1_contig_20, whole genome shotgun sequence (108838 bp)
Overview 1 RT 1: 45552-51542 bp Neighborhood of RT #1 [45552, 51577] Psu RVT-UG7 PRK09692 proA Feature: gene Location: 45552-46124 bp Ori: PBO47917.1 Feature: domain Description: Psu Location: 45570-46107 bp Feature: domain Description: Psu Location: 45570-461 07 bp Feature: gene Location: 46427-47167 bp Feature: gene Location: 47164-48792 bp Ori: PBO47919.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47572-48001 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47572-48001 bp Feature: gene Location: 48785-49969 bp Ori: PBO47920.1 Feature: domain Description: PRK09692 Location: 48791-49946 bp Feature: domain Description: PRK09692 Location: 48791 -49946 bp Feature: gene Location: 50324-51577 bp Ori: PBO47921.1 Gene: proA Feature: domain Description: proA Location: 50351-51542 bp Feature: domain Description: proA Location: 50351 -51 542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), proA (TIGR00407)

Seq: NSBM01000065.1 Escherichia coli strain ECO3347 ECO3347-8R-1_contig_65, whole genome shotgun sequence (7249 bp)
Overview 1 RT 1: 725-4492 bp Neighborhood of RT #1 [725, 4492] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 725-1147 bp Ori: PBO42120.1 Feature: domain Description: DUF1380 Location: 728-1022 bp Feature: domain Description: DUF1380 Location: 72 8-102 2 bp Feature: gene Location: 1144-1335 bp Feature: gene Location: 1649-3316 bp Ori: PBO42122.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1697-1934 bp Feature: domain Description: RVT_N Location: 1697-1934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1985-2627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1985-2 62 7 bp Feature: domain Description: GIIM Note: maturase Location: 2678-2912 bp Feature: domain Description: GIIM Note: maturase Location: 2 678-2 912 bp Feature: domain Description: HNHc Note: nucleases Location: 3122-3281 bp Feature: domain Description: HNHc Note: nucleases Location: 312 2 -32 81 bp Feature: gene Location: 4053-4228 bp Feature: gene Location: 4373-4492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)