myRT

myRT report for GCA_002317705.1_ASM231770v1

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Seq: NSBO01000027.1 Escherichia coli strain ECO3347 ECO3347-4S-2_contig_27, whole genome shotgun sequence (108347 bp)
Overview 1 RT 1: 56864-62872 bp Neighborhood of RT #1 [56864, 62889] proA PRK09692 RVT-UG7 Psu Feature: gene Location: 56864-58117 bp Ori: PBO59780.1 Gene: proA Feature: domain Description: proA Location: 56891-58082 bp Feature: domain Description: proA Location: 56891 -58082 bp Feature: gene Location: 58472-59656 bp Ori: PBO59781.1 Feature: domain Description: PRK09692 Location: 58478-59633 bp Feature: domain Description: PRK09692 Location: 58478-59633 bp Feature: gene Location: 59649-61277 bp Ori: PBO59782.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 60057-60486 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 60057-60486 bp Feature: gene Location: 61274-62014 bp Feature: gene Location: 62317-62889 bp Ori: PBO59784.1 Feature: domain Description: Psu Location: 62335-62872 bp Feature: domain Description: Psu Location: 62335-62872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: NSBO01000090.1 Escherichia coli strain ECO3347 ECO3347-4S-2_contig_90, whole genome shotgun sequence (9158 bp)
Overview 1 RT 1: 2645-6412 bp Neighborhood of RT #1 [2645, 6412] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2645-3067 bp Ori: PBO56436.1 Feature: domain Description: DUF1380 Location: 2648-2942 bp Feature: domain Description: DUF1380 Location: 2 648-2 942 bp Feature: gene Location: 3064-3255 bp Feature: gene Location: 3569-5236 bp Ori: PBO56438.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3617-3854 bp Feature: domain Description: RVT_N Location: 3617-3854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3905-4547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3905-4547 bp Feature: domain Description: GIIM Note: maturase Location: 4598-4832 bp Feature: domain Description: GIIM Note: maturase Location: 4598-4832 bp Feature: domain Description: HNHc Note: nucleases Location: 5042-5201 bp Feature: domain Description: HNHc Note: nucleases Location: 5042 -52 01 bp Feature: gene Location: 5973-6148 bp Feature: gene Location: 6293-6412 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)