myRT

myRT report for GCA_002317725.1_ASM231772v1

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Seq: NSBS01000091.1 Escherichia coli strain ECO3347 ECO3347_contig_92, whole genome shotgun sequence (7024 bp)
Overview 1 RT 1: 510-4277 bp Neighborhood of RT #1 [510, 4277] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 510-932 bp Ori: PBO70946.1 Feature: domain Description: DUF1380 Location: 513-807 bp Feature: domain Description: DUF1 380 Location: 51 3-807 bp Feature: gene Location: 929-1120 bp Feature: gene Location: 1434-3101 bp Ori: PBO70948.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1482-1719 bp Feature: domain Description: RVT_N Location: 1 482-1 71 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1770-2412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 770-241 2 bp Feature: domain Description: GIIM Note: maturase Location: 2463-2697 bp Feature: domain Description: GIIM Note: maturase Location: 2463-2697 bp Feature: domain Description: HNHc Note: nucleases Location: 2907-3066 bp Feature: domain Description: HNHc Note: nucleases Location: 2907-3066 bp Feature: gene Location: 3838-4013 bp Feature: gene Location: 4158-4277 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NSBS01000037.1 Escherichia coli strain ECO3347 ECO3347_contig_37, whole genome shotgun sequence (110790 bp)
Overview 1 RT 1: 45460-51450 bp Neighborhood of RT #1 [45460, 51485] Psu RVT-UG7 PRK09692 proA Feature: gene Location: 45460-46032 bp Ori: PBO75685.1 Feature: domain Description: Psu Location: 45478-46015 bp Feature: domain Description: Psu Location: 45478-46015 bp Feature: gene Location: 46335-47075 bp Feature: gene Location: 47072-48700 bp Ori: PBO75687.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47480-47909 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47480-47909 bp Feature: gene Location: 48693-49877 bp Ori: PBO75688.1 Feature: domain Description: PRK09692 Location: 48699-49854 bp Feature: domain Description: PRK09692 Location: 48699-49854 bp Feature: gene Location: 50232-51485 bp Ori: PBO75689.1 Gene: proA Feature: domain Description: proA Location: 50259-51450 bp Feature: domain Description: proA Location: 502 59-51450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), proA (TIGR00407)