myRT

myRT report for GCA_002317755.1_ASM231775v1

Download annotations/find similar RTs

Seq: NSBL01000080.1 Escherichia coli strain ECO3347 ECO3347-8R-2_contig_80, whole genome shotgun sequence (7067 bp)
Overview 1 RT 1: 2758-6400 bp Neighborhood of RT #1 [2758, 6525] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2758-2877 bp Feature: gene Location: 3022-3197 bp Feature: gene Location: 3934-5601 bp Ori: PBO41757.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3982-4219 bp Feature: domain Description: RVT_N Location: 3982-421 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4270-4912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4270-491 2 bp Feature: domain Description: GIIM Note: maturase Location: 4963-5197 bp Feature: domain Description: GIIM Note: maturase Location: 4963-51 97 bp Feature: domain Description: HNHc Note: nucleases Location: 5407-5566 bp Feature: domain Description: HNHc Note: nucleases Location: 5407-5566 bp Feature: gene Location: 5915-6106 bp Feature: gene Location: 6103-6525 bp Ori: PBO41759.1 Feature: domain Description: DUF1380 Location: 6106-6400 bp Feature: domain Description: DUF1 380 Location: 61 06-6400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: NSBL01000017.1 Escherichia coli strain ECO3347 ECO3347-8R-2_contig_17, whole genome shotgun sequence (108369 bp)
Overview 1 RT 1: 45470-51460 bp Neighborhood of RT #1 [45470, 51495] Psu RVT-UG7 PRK09692 proA Feature: gene Location: 45470-46042 bp Ori: PBO49049.1 Feature: domain Description: Psu Location: 45488-46025 bp Feature: domain Description: Psu Location: 45488-4602 5 bp Feature: gene Location: 46345-47085 bp Feature: gene Location: 47082-48710 bp Ori: PBO49051.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47490-47919 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47490-47919 bp Feature: gene Location: 48703-49887 bp Ori: PBO49052.1 Feature: domain Description: PRK09692 Location: 48709-49864 bp Feature: domain Description: PRK09692 Location: 48709-49864 bp Feature: gene Location: 50242-51495 bp Ori: PBO49053.1 Gene: proA Feature: domain Description: proA Location: 50269-51460 bp Feature: domain Description: proA Location: 502 69-51460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), proA (TIGR00407)