myRT

myRT report for GCA_002317875.1_ASM231787v1

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Seq: NQDD01000045.1 Shigella sonnei strain ECFood+08 NODE_34_length_53317_cov_74.8902_ID_67.ctg_1, whole genome shotgun sequence (53317 bp)
Overview 1 RT 1: 486-7936 bp Neighborhood of RT #1 [486, 7947] RVT-UG8 RVT-UG3 INT_Rci_Hp1_C INT_P4_C mutS1 Feature: gene Location: 486-2504 bp Ori: PBP07688.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1056-1506 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 056-1 506 bp Feature: gene Location: 2501-3763 bp Ori: PBP07689.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2783-3278 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2783-3278 bp Feature: gene Location: 3760-5220 bp Ori: PBP07690.1 Feature: domain Description: INT_Rci_Hp1_C Location: 4135-4342 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 41 35-4342 bp Feature: domain Description: INT_P4_C Location: 4561-5098 bp Feature: domain Description: INT_P4_C Location: 4561 -5098 bp Feature: gene Location: 5380-7947 bp Ori: PBP07735.1 Gene: mutS Feature: domain Description: mutS1 Location: 5416-7936 bp Feature: domain Description: mutS1 Location: 541 6-7936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3, INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), mutS1 (TIGR01070)

Seq: NQDD01000106.1 Shigella sonnei strain ECFood+08 NODE_70_length_12018_cov_30.1809_ID_139.ctg_1, whole genome shotgun sequence (12018 bp)
Overview 1 RT 1: 1-2683 bp Neighborhood of RT #1 [1, 2700] InsA RVT-GII PRK10276 Feature: gene Location: 1-224 bp Ori: PBP00191.1 Feature: domain Description: InsA Location: 7-223 bp Feature: domain Description: InsA Location: 7-2 2 3 bp Feature: gene Location: 376-1860 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 778-1468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 778-1468 bp Feature: gene Location: 1860-2111 bp Feature: gene Location: 2269-2700 bp Ori: PBP00179.1 Feature: domain Description: PRK10276 Location: 2320-2683 bp Feature: domain Description: PRK102 76 Location: 2 32 0-2 683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: NQDD01000114.1 Shigella sonnei strain ECFood+08 NODE_51_length_34260_cov_24.7997_ID_101.ctg_1, whole genome shotgun sequence (34260 bp)
Overview 1 RT 1: 11-3947 bp Neighborhood of RT #1 [11, 3994] RVT-GII GIIM PHA02517 Rep_3 Feature: gene Location: 11-103 bp Feature: gene Location: 69-440 bp Feature: gene Location: 734-2257 bp Ori: PBO99780.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-1739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-173 9 bp Feature: domain Description: GIIM Note: maturase Location: 1814-2012 bp Feature: domain Description: GIIM Note: maturase Location: 1814-2012 bp Feature: gene Location: 2347-2820 bp Feature: domain Description: PHA02517 Location: 2353-2818 bp Feature: domain Description: PHA02517 Location: 23 53 -2818 bp Feature: gene Location: 3113-3994 bp Ori: PBO99781.1 Feature: domain Description: Rep_3 Location: 3203-3947 bp Feature: domain Description: Rep_3 Location: 3 203 -3 947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), Rep_3 (pfam01051)