myRT

myRT report for GCA_002320155.1_ASM232015v1

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Seq: DCJX01000137.1 TPA_asm: Lachnospiraceae bacterium UBA1689 UBA1689_contig_1028, whole genome shotgun sequence (61556 bp)
Overview 1 RT 1: 56862-59803 bp Neighborhood of RT #1 [56862, 59803] AbiEi_4 COG5340 RVT-GII Feature: gene Location: 56862-57488 bp Feature: domain Description: AbiEi_4 Location: 56916-57048 bp Feature: domain Description: AbiEi_4 Location: 5691 6-57048 bp Feature: domain Description: COG5340 Location: 57078-57414 bp Feature: domain Description: COG5340 Location: 57078-5741 4 bp Feature: gene Location: 57638-58147 bp Feature: gene Location: 58299-59024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58479-58926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58479-58926 bp Feature: gene Location: 58996-59277 bp Feature: gene Location: 59591-59803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEi_4 (pfam13338), COG5340 (Transcriptional regulator, predicted component of viral defense system ), RVT-GII

Seq: DCJX01000108.1 TPA_asm: Lachnospiraceae bacterium UBA1689 UBA1689_contig_146, whole genome shotgun sequence (115181 bp)
Overview 1 RT 1: 91432-97135 bp Neighborhood of RT #1 [91432, 97146] N6_N4_Mtase TraC-F-type RVT_N RVT-GII GIIM VirB4_CagE VirB4_CagE AAA_10 Feature: gene Location: 91432-92391 bp Feature: domain Description: N6_N4_Mtase Location: 91510-92362 bp Feature: domain Description: N6_N4_Mtase Location: 91510-92 362 bp Feature: gene Location: 92388-93401 bp Feature: domain Description: TraC-F-type Location: 92559-93267 bp Feature: domain Description: TraC-F-type Location: 92 559-932 67 bp Feature: gene Location: 93406-95109 bp Feature: domain Description: RVT_N Location: 93508-93751 bp Feature: domain Description: RVT_N Location: 93508-93751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93796-94456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93796-94456 bp Feature: domain Description: GIIM Note: maturase Location: 94510-94744 bp Feature: domain Description: GIIM Note: maturase Location: 94510-94744 bp Feature: gene Location: 95340-95501 bp Feature: gene Location: 95614-97146 bp Feature: domain Description: VirB4_CagE Location: 95749-96187 bp Feature: domain Description: VirB4_CagE Location: 95749-96187 bp Feature: domain Description: VirB4_CagE Location: 96433-96919 bp Feature: domain Description: VirB4_CagE Location: 96433-96919 bp Feature: domain Description: AAA_10 Location: 96988-97135 bp Feature: domain Description: AAA_10 Location: 96988-97135 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_N4_Mtase (pfam01555), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VirB4_CagE (TIGR00929), AAA_10 (pfam12846)

Seq: DCJX01000013.1 TPA_asm: Lachnospiraceae bacterium UBA1689 UBA1689_contig_1953, whole genome shotgun sequence (79901 bp)
Overview 1 RT 1: 52263-54708 bp Neighborhood of RT #1 [52263, 54708] HTH_TioE_rpt1 VOC RVT-Retrons Feature: gene Location: 52263-52535 bp Feature: domain Description: HTH_TioE_rpt1 Location: 52275-52515 bp Feature: domain Description: HTH_TioE_rpt1 Location: 52275-52515 bp Feature: gene Location: 52659-53096 bp Feature: domain Description: VOC Location: 52689-53040 bp Feature: domain Description: VOC Location: 52689-53 040 bp Feature: gene Location: 53206-54192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53377-53929 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53 3 77-53 929 bp Feature: gene Location: 54246-54491 bp Feature: gene Location: 54538-54708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_TioE_rpt1 (cd04772), VOC (cl14632), RVT-Retrons

Seq: DCJX01000035.1 TPA_asm: Lachnospiraceae bacterium UBA1689 UBA1689_contig_2911, whole genome shotgun sequence (20560 bp)
Overview 1 RT 1: 1-1550 bp Neighborhood of RT #1 [1, 1550] RVT-GII RVT-GII INT_RitC_C_like Feature: gene Location: 1-309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115-304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115-304 bp Feature: gene Location: 310-591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316-502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316-502 bp Feature: gene Location: 595-1020 bp Feature: domain Description: INT_RitC_C_like Location: 598-943 bp Feature: domain Description: INT_RitC_C_like Location: 598-94 3 bp Feature: gene Location: 1293-1550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, INT_RitC_C_like (cd01182)

Seq: DCJX01000077.1 TPA_asm: Lachnospiraceae bacterium UBA1689 UBA1689_contig_3957, whole genome shotgun sequence (53154 bp)
Overview 1 RT 1: 38716-41360 bp Neighborhood of RT #1 [38716, 41360] DedA RVT-GII RVT-GII Feature: gene Location: 38716-39486 bp Feature: gene Location: 39521-40144 bp Feature: domain Description: DedA Location: 39524-40130 bp Feature: domain Description: DedA Location: 395 24-40130 bp Feature: gene Location: 40362-40721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40371-40620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40371-40620 bp Feature: gene Location: 40803-40949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40851-40947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4085 1-40947 bp Feature: gene Location: 40958-41149 bp Feature: gene Location: 41175-41360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DedA (COG0586), RVT-GII

Seq: DCJX01000006.1 TPA_asm: Lachnospiraceae bacterium UBA1689 UBA1689_contig_6169, whole genome shotgun sequence (5799 bp)
Overview 1 RT 1: 608-3956 bp Neighborhood of RT #1 [608, 4399] RVT_N RVT-GII GIIM HTH_Tnp_1 HTH_32 rve Feature: gene Location: 608-2074 bp Feature: domain Description: RVT_N Location: 623-866 bp Feature: domain Description: RVT_N Location: 6 23-86 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 926-1571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 926 -1571 bp Feature: domain Description: GIIM Note: maturase Location: 1628-1856 bp Feature: domain Description: GIIM Note: maturase Location: 16 28-1856 bp Feature: gene Location: 2453-2950 bp Feature: domain Description: HTH_Tnp_1 Location: 2735-2861 bp Feature: domain Description: HTH_Tnp_1 Location: 2735-286 1 bp Feature: gene Location: 3125-4399 bp Feature: domain Description: HTH_32 Location: 3308-3536 bp Feature: domain Description: HTH_32 Location: 3308-3536 bp Feature: domain Description: rve Location: 3611-3956 bp Feature: domain Description: rve Location: 36 11-3956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), HTH_32 (pfam13565), rve (pfam00665)