myRT

myRT report for GCA_002320695.1_ASM232069v1

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Seq: DCKP01000305.1 TPA_asm: Myxococcales bacterium UBA1671 UBA1671_contig_2079, whole genome shotgun sequence (227153 bp)
Overview 1 RT 1: 98899-107239 bp Neighborhood of RT #1 [98899, 107247] OmpR ligand_gated_channel ligand_gated_channel RVT-Retrons RVT-Retrons OEP OEP PRK05437 Feature: gene Location: 98899-99624 bp Feature: domain Description: OmpR Location: 98920-99604 bp Feature: domain Description: OmpR Location: 98920-99604 bp Feature: gene Location: 99630-101921 bp Feature: domain Description: ligand_gated_channel Location: 100116-100671 bp Feature: domain Description: ligand_gated_channel Location: 1 001 1 6-1 00671 bp Feature: domain Description: ligand_gated_channel Location: 101133-101871 bp Feature: domain Description: ligand_gated_channel Location: 1 01 1 33-1 01 871 bp Feature: gene Location: 102128-104281 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 102338-102959 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 02338-1 02959 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103382-103979 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 03382-1 03979 bp Feature: gene Location: 104329-105960 bp Feature: domain Description: OEP Location: 104509-105253 bp Feature: domain Description: OEP Location: 1 04509-1 05253 bp Feature: domain Description: OEP Location: 105328-105877 bp Feature: domain Description: OEP Location: 1 05328-1 05877 bp Feature: gene Location: 106141-107247 bp Feature: domain Description: PRK05437 Location: 106225-107239 bp Feature: domain Description: PRK05437 Location: 1 06225-1 07239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, OEP (pfam02321), PRK05437 (isopentenyl pyrophosphate isomerase; Provisional), OmpR (COG0745), ligand_gated_channel (cd01347)

Seq: DCKP01000153.1 TPA_asm: Myxococcales bacterium UBA1671 UBA1671_contig_30430, whole genome shotgun sequence (97802 bp)
Overview 1 RT 1: 59725-65861 bp Neighborhood of RT #1 [59725, 65923] WGR_MMR_like RVT-Retrons SpoIID YdiL Feature: gene Location: 59725-60267 bp Feature: gene Location: 60283-62130 bp Feature: domain Description: WGR_MMR_like Location: 61969-62113 bp Feature: domain Description: WGR_MMR_like Location: 61969-62 113 bp Feature: gene Location: 62166-63506 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62640-63258 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62 640-632 58 bp Feature: gene Location: 63627-65282 bp Feature: domain Description: SpoIID Location: 64251-65268 bp Feature: domain Description: SpoIID Location: 642 51-652 68 bp Feature: gene Location: 65285-65923 bp Feature: domain Description: YdiL Location: 65327-65861 bp Feature: domain Description: YdiL Location: 6532 7-65861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_MMR_like (cd07996), RVT-Retrons, SpoIID (pfam08486), YdiL (COG1266)

Seq: DCKP01000173.1 TPA_asm: Myxococcales bacterium UBA1671 UBA1671_contig_4031, whole genome shotgun sequence (67658 bp)
Overview 1 RT 1: 43064-54662 bp Neighborhood of RT #1 [43064, 54691] HEAT_2 SWIM RVT-Retrons BaeS PleD PRK10060 Feature: gene Location: 43064-47707 bp Feature: domain Description: HEAT_2 Location: 43094-43247 bp Feature: domain Description: HEAT_2 Location: 43 094-43 247 bp Feature: gene Location: 47697-49331 bp Feature: domain Description: SWIM Location: 49224-49305 bp Feature: domain Description: SWIM Location: 49224-493 05 bp Feature: gene Location: 49342-50751 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49903-50512 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49903 -50512 bp Feature: gene Location: 50955-52481 bp Feature: domain Description: BaeS Location: 51702-52419 bp Feature: domain Description: BaeS Location: 51702-52419 bp Feature: gene Location: 52586-54691 bp Feature: domain Description: PleD Location: 52613-53015 bp Feature: domain Description: PleD Location: 52613 -53 015 bp Feature: domain Description: PRK10060 Location: 53300-54662 bp Feature: domain Description: PRK10060 Location: 53 3 00-54662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEAT_2 (pfam13646), SWIM (pfam04434), RVT-Retrons, BaeS (COG0642), PleD (COG3706), PRK10060 (cyclic di-GMP phosphodiesterase)

Seq: DCKP01000032.1 TPA_asm: Myxococcales bacterium UBA1671 UBA1671_contig_5459, whole genome shotgun sequence (115816 bp)
Overview 1 RT 1: 102129-106163 bp Neighborhood of RT #1 [102129, 106163] RVT-GII Serpin Feature: gene Location: 102129-102464 bp Feature: gene Location: 102469-102609 bp Feature: gene Location: 102872-103846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103196-103811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103196-103811 bp Feature: gene Location: 104561-105808 bp Feature: domain Description: Serpin Location: 104702-105800 bp Feature: domain Description: Serpin Location: 104 702-105800 bp Feature: gene Location: 105972-106163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Serpin (pfam00079)

Seq: DCKP01000141.1 TPA_asm: Myxococcales bacterium UBA1671 UBA1671_contig_897, whole genome shotgun sequence (46596 bp)
Overview 1 RT 1: 36825-46345 bp Neighborhood of RT #1 [36825, 46578] DUF3421 DUF3421 DUF3421 TECPR TECPR TECPR HEAT_2 HEAT_2 Aldo_ket_red RVT-Retrons YfmG Feature: gene Location: 36825-40790 bp Feature: domain Description: DUF3421 Location: 36969-37302 bp Feature: domain Description: DUF3421 Location: 36969-37302 bp Feature: domain Description: DUF3421 Location: 39030-39360 bp Feature: domain Description: DUF3421 Location: 39030-39360 bp Feature: domain Description: DUF3421 Location: 39768-40080 bp Feature: domain Description: DUF3421 Location: 39768-40080 bp Feature: domain Description: TECPR Location: 40356-40449 bp Feature: domain Description: TECPR Location: 4035 6-40449 bp Feature: domain Description: TECPR Location: 40563-40659 bp Feature: domain Description: TECPR Location: 405 63-4065 9 bp Feature: domain Description: TECPR Location: 40668-40767 bp Feature: domain Description: TECPR Location: 40668-40767 bp Feature: gene Location: 41496-43925 bp Feature: domain Description: HEAT_2 Location: 41592-41838 bp Feature: domain Description: HEAT_2 Location: 415 92-41838 bp Feature: domain Description: HEAT_2 Location: 42120-42333 bp Feature: domain Description: HEAT_2 Location: 42120-42333 bp Feature: domain Description: Aldo_ket_red Location: 43134-43866 bp Feature: domain Description: Aldo_ket_red Location: 43134-43866 bp Feature: gene Location: 44070-45635 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44739-45363 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44739-45 363 bp Feature: gene Location: 45628-46578 bp Feature: domain Description: YfmG Location: 45835-46345 bp Feature: domain Description: YfmG Location: 45 835 -46345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3421 (pfam11901), TECPR (smart00706), HEAT_2 (pfam13646), Aldo_ket_red (pfam00248), RVT-Retrons, YfmG (COG1262)