myRT

myRT report for GCA_002321935.1_ASM232193v1

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Seq: NPIK01000002.1 Cylindrospermopsis raciborskii CYLP CYLPScaffold_2, whole genome shotgun sequence (3476922 bp)
Overview 1 RT 1: 2000986-2006875 bp 2 RT 2: 2296508-2301507 bp 3 RT 3: 2339000-2342343 bp 4 RT 4: 2415816-2421087 bp Neighborhood of RT #1 [2000986, 2006922] TlyC DUF3157 RVT_N RVT-GII GIIM QueC MviM Neighborhood of RT #2 [2296508, 2301507] DUF3598 RTPR RVT-GII GIIM YkfC RVT-GII Neighborhood of RT #3 [2339000, 2342354] HEAT CpeS RVT_N RVT-GII GIIM CpeS cyt_b559_alpha Neighborhood of RT #4 [2415816, 2421119] DppC KOG0404 TRX_NTR RVT_N RVT-GII GIIM KOG0404 N_methyl Pilin_GH Feature: gene Location: 2000986-2001918 bp Feature: domain Description: TlyC Location: 2001025-2001856 bp Feature: domain Description: TlyC Location: 2001 025-2001 856 bp Feature: gene Location: 2002014-2002718 bp Feature: domain Description: DUF3157 Location: 2002395-2002545 bp Feature: domain Description: DUF31 57 Location: 2002395-2002545 bp Feature: gene Location: 2003387-2005063 bp Feature: RT Description: RVT_N Location: 2003414-2003642 bp Feature: RT Description: RVT_N Location: 200341 4-2003642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2003678-2004338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2003678-2004338 bp Feature: domain Description: GIIM Note: maturase Location: 2004440-2004671 bp Feature: domain Description: GIIM Note: maturase Location: 2004440-2004671 bp Feature: gene Location: 2005196-2005876 bp Feature: domain Description: QueC Location: 2005199-2005862 bp Feature: domain Description: QueC Location: 20051 99-2005862 bp Feature: gene Location: 2006029-2006922 bp Feature: domain Description: MviM Location: 2006146-2006875 bp Feature: domain Description: MviM Location: 20061 46-2006875 bp Feature: gene Location: 2296508-2297362 bp Feature: domain Description: DUF3598 Location: 2296517-2297348 bp Feature: domain Description: DUF3598 Location: 229651 7-2297348 bp Feature: gene Location: 2297471-2299342 bp Feature: domain Description: RTPR Location: 2297474-2299307 bp Feature: domain Description: RTPR Location: 2297474-2299307 bp Feature: gene Location: 2299526-2300170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2299529-2299712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2299529-229971 2 bp Feature: domain Description: GIIM Note: maturase Location: 2299793-2300027 bp Feature: domain Description: GIIM Note: maturase Location: 2299793-2300027 bp Feature: gene Location: 2300187-2300798 bp Feature: domain Description: YkfC Location: 2300235-2300391 bp Feature: domain Description: YkfC Location: 2300235-2300391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2300391-2300790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2300391 -2300790 bp Feature: gene Location: 2300825-2300977 bp Feature: gene Location: 2301319-2301507 bp Feature: gene Location: 2339000-2339539 bp Feature: domain Description: HEAT Location: 2339006-2339489 bp Feature: domain Description: HEAT Location: 2339006-2339489 bp Feature: gene Location: 2339624-2339890 bp Feature: domain Description: CpeS Location: 2339630-2339858 bp Feature: domain Description: CpeS Location: 2339630-2339858 bp Feature: gene Location: 2340413-2341534 bp Feature: RT Description: RVT_N Location: 2340449-2340620 bp Feature: RT Description: RVT_N Location: 2340449-2340620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2340638-2341154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2340638-2341 1 54 bp Feature: domain Description: GIIM Note: maturase Location: 2341214-2341406 bp Feature: domain Description: GIIM Note: maturase Location: 2341 21 4-2341 406 bp Feature: gene Location: 2341688-2341867 bp Feature: domain Description: CpeS Location: 2341691-2341862 bp Feature: domain Description: CpeS Location: 2341 691 -2341 862 bp Feature: gene Location: 2342106-2342354 bp Feature: domain Description: cyt_b559_alpha Location: 2342112-2342343 bp Feature: domain Description: cyt_b559_alpha Location: 23421 1 2-2342343 bp Feature: gene Location: 2415816-2416628 bp Feature: domain Description: DppC Location: 2415822-2416620 bp Feature: domain Description: DppC Location: 241 5822-241 6620 bp Feature: gene Location: 2416770-2417885 bp Feature: domain Description: KOG0404 Location: 2416773-2417505 bp Feature: domain Description: KOG0404 Location: 241 6773-241 7505 bp Feature: domain Description: TRX_NTR Location: 2417625-2417853 bp Feature: domain Description: TRX_NTR Location: 241 7625-241 7853 bp Feature: gene Location: 2418091-2419557 bp Feature: RT Description: RVT_N Location: 2418175-2418358 bp Feature: RT Description: RVT_N Location: 241 81 75-241 8358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2418439-2419063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 8439-241 9063 bp Feature: domain Description: GIIM Note: maturase Location: 2419207-2419432 bp Feature: domain Description: GIIM Note: maturase Location: 241 9207-241 9432 bp Feature: gene Location: 2420193-2420381 bp Feature: domain Description: KOG0404 Location: 2420223-2420370 bp Feature: domain Description: KOG0404 Location: 2420223-2420370 bp Feature: gene Location: 2420595-2421119 bp Feature: domain Description: N_methyl Location: 2420655-2420724 bp Feature: domain Description: N_methyl Location: 2420655-2420724 bp Feature: domain Description: Pilin_GH Location: 2420760-2421087 bp Feature: domain Description: Pilin_GH Location: 2420760-2421 087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TlyC (COG1253), DUF3157 (pfam11355), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), QueC (pfam06508), MviM (COG0673), DUF3598 (pfam12204), RTPR (TIGR02505), YkfC (COG3344)
HEAT (sd00044), CpeS (pfam09367), cyt_b559_alpha (TIGR01332), DppC (COG1173), KOG0404 (KOG0404, Thioredoxin reductase ), TRX_NTR (cd02949), N_methyl (pfam07963), Pilin_GH (pfam16734)