myRT

myRT report for GCA_002322295.1_ASM232229v1

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Seq: DCOE01000012.1 TPA_asm: Sphingobacterium sp. UBA1578 UBA1578_contig_22, whole genome shotgun sequence (357758 bp)
Overview 1 RT 1: 348462-352745 bp Neighborhood of RT #1 [348462, 352756] DUF4141 Bac_Flav_CT_G RVT-GII group_II_RT_mat HNHc Bac_Flav_CT_G Feature: gene Location: 348462-349094 bp Feature: domain Description: DUF4141 Location: 348480-348633 bp Feature: domain Description: DUF41 41 Location: 348480-348633 bp Feature: gene Location: 349117-349584 bp Feature: domain Description: Bac_Flav_CT_G Location: 349129-349540 bp Feature: domain Description: Bac_Flav_CT_G Location: 3491 29-349540 bp Feature: gene Location: 349680-351491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349944-350766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349944-350766 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 350976-351096 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 350976-351 096 bp Feature: domain Description: HNHc Note: nucleases Location: 351309-351465 bp Feature: domain Description: HNHc Note: nucleases Location: 351 309-351 465 bp Feature: gene Location: 351618-351746 bp Feature: gene Location: 352037-352756 bp Feature: domain Description: Bac_Flav_CT_G Location: 352040-352745 bp Feature: domain Description: Bac_Flav_CT_G Location: 352040-352745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, group_II_RT_mat (TIGR04416), HNHc (smart00507)

Seq: DCOE01000027.1 TPA_asm: Sphingobacterium sp. UBA1578 UBA1578_contig_33, whole genome shotgun sequence (243249 bp)
Overview 1 RT 1: 35813-49031 bp Neighborhood of RT #1 [35813, 49282] LacZ DUF4982 Glyco_hydro2_C5 RVT-UG8 RVT-UG3 COG0610 DUF3883 Feature: gene Location: 35813-36748 bp Feature: gene Location: 36753-39197 bp Feature: domain Description: LacZ Location: 36864-38514 bp Feature: domain Description: LacZ Location: 36864-38514 bp Feature: domain Description: DUF4982 Location: 38658-38835 bp Feature: domain Description: DUF4982 Location: 38658-38835 bp Feature: domain Description: Glyco_hydro2_C5 Location: 38877-39180 bp Feature: domain Description: Glyco_hydro2 _C5 Location: 38877-39180 bp Feature: gene Location: 39567-41636 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 40179-40632 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 40179-40632 bp Feature: gene Location: 41642-43000 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 42086-42587 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 42 086-42 587 bp Feature: gene Location: 43035-46004 bp Feature: domain Description: COG0610 Location: 43119-45759 bp Feature: domain Description: COG0610 Location: 43119-45759 bp Feature: gene Location: 46028-49282 bp Feature: domain Description: DUF3883 Location: 48809-49031 bp Feature: domain Description: DUF3883 Location: 48809-49031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacZ (COG3250), DUF4982 (pfam16355), Glyco_hydro2_C5 (pfam18565), RVT-UG8, RVT-UG3, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF3883 (pfam13020)