myRT

myRT report for GCA_002322395.1_ASM232239v1

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Seq: DCOL01000093.1 TPA_asm: Mariprofundus sp. UBA1571 UBA1571_contig_22771, whole genome shotgun sequence (12287 bp)
Overview 1 RT 1: 6792-12134 bp Neighborhood of RT #1 [6792, 12193] Cas_Cas02710 DUF1887 CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III CRISPR_Cas2 Feature: gene Location: 6792-7628 bp Feature: domain Description: Cas_Cas02710 Location: 7248-7548 bp Feature: domain Description: Cas_Cas0271 0 Location: 7248-7548 bp Feature: gene Location: 7880-9028 bp Feature: domain Description: DUF1887 Location: 7895-8960 bp Feature: domain Description: DUF1 887 Location: 7895-8960 bp Feature: gene Location: 9018-11918 bp Feature: domain Description: CRISPR_Cas6 Location: 9729-9888 bp Feature: domain Description: CRISPR_Cas6 Location: 9729-9888 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 10134-10728 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 01 34-1 0728 bp Feature: domain Description: Cas1_I-II-III Location: 10974-11859 bp Feature: domain Description: Cas1 _I-II-III Location: 1 0974-1 1 859 bp Feature: gene Location: 11915-12193 bp Feature: domain Description: CRISPR_Cas2 Location: 11930-12134 bp Feature: domain Description: CRISPR_Cas2 Location: 1 1 930-1 21 34 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cas02710 (pfam09670), DUF1887 (pfam09002), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), CRISPR_Cas2 (pfam09827)

Seq: DCOL01000110.1 TPA_asm: Mariprofundus sp. UBA1571 UBA1571_contig_34238, whole genome shotgun sequence (12383 bp)
Overview 1 RT 1: 144-6098 bp Neighborhood of RT #1 [144, 6235] Mfd PRK10262 RVT-Retrons HTH_19 Feature: gene Location: 144-3476 bp Feature: domain Description: Mfd Location: 180-3471 bp Feature: domain Description: Mfd Location: 180-3471 bp Feature: gene Location: 3532-4467 bp Feature: domain Description: PRK10262 Location: 3535-4456 bp Feature: domain Description: PRK102 62 Location: 3535-4456 bp Feature: gene Location: 4940-5446 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4943-5225 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4943-52 2 5 bp Feature: gene Location: 5467-5613 bp Feature: gene Location: 5909-6235 bp Feature: domain Description: HTH_19 Location: 5927-6098 bp Feature: domain Description: HTH_19 Location: 592 7-6098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mfd (COG1197), PRK10262 (thioredoxin reductase; Provisional), RVT-Retrons, HTH_19 (pfam12844)

Seq: DCOL01000052.1 TPA_asm: Mariprofundus sp. UBA1571 UBA1571_contig_37719, whole genome shotgun sequence (10943 bp)
Overview 1 RT 1: 2386-5191 bp Neighborhood of RT #1 [2386, 5191] RVT_N RVT-GII GIIM Feature: gene Location: 2386-2556 bp Feature: gene Location: 2804-2941 bp Feature: gene Location: 3198-4529 bp Feature: domain Description: RVT_N Location: 3264-3507 bp Feature: domain Description: RVT_N Location: 3 264-3 507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3552-4164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 552-4164 bp Feature: domain Description: GIIM Note: maturase Location: 4170-4284 bp Feature: domain Description: GIIM Note: maturase Location: 4170-4284 bp Feature: gene Location: 4589-4927 bp Feature: gene Location: 4940-5191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)