myRT

myRT report for GCA_002322525.1_ASM232252v1

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Seq: DCOU01000041.1 TPA_asm: Candidatus Omnitrophica bacterium UBA1562 UBA1562_contig_36849, whole genome shotgun sequence (8301 bp)
Overview 1 RT 1: 2621-7815 bp Neighborhood of RT #1 [2621, 8141] COG4487 RVT-Retrons AAA_15 AAA_15 TOPRIM_OLD Feature: gene Location: 2621-3907 bp Feature: domain Description: COG4487 Location: 2639-3890 bp Feature: domain Description: COG4487 Location: 2639-3890 bp Feature: gene Location: 3989-4126 bp Feature: gene Location: 4144-5091 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4285-4843 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4285-4843 bp Feature: gene Location: 5214-6152 bp Feature: gene Location: 6186-8141 bp Feature: domain Description: AAA_15 Location: 6207-6336 bp Feature: domain Description: AAA_1 5 Location: 6207-6336 bp Feature: domain Description: AAA_15 Location: 7263-7395 bp Feature: domain Description: AAA_1 5 Location: 7263-7395 bp Feature: domain Description: TOPRIM_OLD Location: 7554-7815 bp Feature: domain Description: TOPRIM_OLD Location: 7554-781 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4487 (Uncharacterized protein, contains DUF2130 domain ), RVT-Retrons, AAA_15 (pfam13175), TOPRIM_OLD (cd01026)

Seq: DCOU01000043.1 TPA_asm: Candidatus Omnitrophica bacterium UBA1562 UBA1562_contig_3925, whole genome shotgun sequence (7580 bp)
Overview 1 RT 1: 2-3482 bp Neighborhood of RT #1 [2, 3490] PBECR2 RVT-DGRs RVT-DGRs Avd_like Feature: gene Location: 2-835 bp Feature: gene Location: 913-1251 bp Feature: domain Description: PBECR2 Location: 1030-1216 bp Feature: domain Description: PBECR2 Location: 1030-12 16 bp Feature: gene Location: 1444-2025 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1450-1783 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1450-1783 bp Feature: gene Location: 2111-2506 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2321-2501 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 32 1-2 501 bp Feature: gene Location: 2503-2907 bp Feature: gene Location: 2897-3490 bp Feature: domain Description: Avd_like Location: 3176-3482 bp Feature: domain Description: Avd_like Location: 3176-3482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, PBECR2 (pfam18810), Avd_like (cd16376)

Seq: DCOU01000077.1 TPA_asm: Candidatus Omnitrophica bacterium UBA1562 UBA1562_contig_5680, whole genome shotgun sequence (9272 bp)
Overview 1 RT 1: 504-5169 bp Neighborhood of RT #1 [504, 5171] RVT-GII GIIM Sortilin-Vps10 Sortilin-Vps10 Sortilin-Vps10 MoxR Feature: gene Location: 504-1823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 798-1419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 798-1419 bp Feature: domain Description: GIIM Note: maturase Location: 1467-1659 bp Feature: domain Description: GIIM Note: maturase Location: 1467-1659 bp Feature: gene Location: 2339-3901 bp Feature: domain Description: Sortilin-Vps10 Location: 2516-2690 bp Feature: domain Description: Sortilin-Vps10 Location: 2516-2690 bp Feature: domain Description: Sortilin-Vps10 Location: 2777-2966 bp Feature: domain Description: Sortilin-Vps10 Location: 2777-2966 bp Feature: domain Description: Sortilin-Vps10 Location: 3002-3185 bp Feature: domain Description: Sortilin-Vps10 Location: 3 002-3 185 bp Feature: gene Location: 4245-5171 bp Feature: domain Description: MoxR Location: 4260-5169 bp Feature: domain Description: MoxR Location: 4260-5169 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sortilin-Vps10 (pfam15902), MoxR (COG0714), RVT-GII, GIIM (pfam08388)