myRT

myRT report for GCA_002324155.1_ASM232415v1

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Seq: NTDE01000059.1 Escherichia coli strain KCJK500 NODE_36_length_24538_cov_44.7868_ID_71, whole genome shotgun sequence (24538 bp)
Overview 1 RT 1: 11432-14906 bp Neighborhood of RT #1 [11432, 14923] Rep_3 Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 11432-11740 bp Feature: domain Description: Rep_3 Location: 11438-11702 bp Feature: domain Description: Rep_3 Location: 1 1 438-1 1 702 bp Feature: gene Location: 11750-12447 bp Feature: domain Description: Zn_Tnp_IS1 Location: 11756-11858 bp Feature: domain Description: Zn_Tnp_IS1 Location: 1 1 756-1 1 858 bp Feature: domain Description: HTH_Tnp_IS1 Location: 11879-12011 bp Feature: domain Description: HTH_Tnp_IS1 Location: 1 1 879-1 201 1 bp Feature: gene Location: 12599-14083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13001-13691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3001 -1 3691 bp Feature: gene Location: 14083-14334 bp Feature: gene Location: 14492-14923 bp Feature: domain Description: PRK10276 Location: 14543-14906 bp Feature: domain Description: PRK1 0276 Location: 1 4543-1 4906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: NTDE01000032.1 Escherichia coli strain KCJK500 NODE_20_length_91267_cov_11.9815_ID_39, whole genome shotgun sequence (91267 bp)
Overview 1 RT 1: 9906-13785 bp Neighborhood of RT #1 [9906, 13790] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9906-10361 bp Feature: domain Description: dut Location: 9909-10356 bp Feature: domain Description: dut Location: 9909-10356 bp Feature: gene Location: 10468-11064 bp Feature: domain Description: slmA Location: 10474-11050 bp Feature: domain Description: slmA Location: 10474-11050 bp Feature: gene Location: 11110-12069 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11245-11794 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 112 45-11794 bp Feature: gene Location: 12367-13008 bp Feature: domain Description: pyrE Location: 12370-13003 bp Feature: domain Description: pyrE Location: 12 370-13003 bp Feature: gene Location: 13074-13790 bp Feature: domain Description: rph Location: 13077-13785 bp Feature: domain Description: rph Location: 13077-13785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), dut (TIGR00576)