myRT

myRT report for GCA_002324225.1_ASM232422v1

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Seq: NTDO01000019.1 Escherichia coli strain KCJK514 NODE_17_length_112737_cov_16.5976_ID_33, whole genome shotgun sequence (112737 bp)
Overview 1 RT 1: 9776-13655 bp Neighborhood of RT #1 [9776, 13660] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9776-10231 bp Feature: domain Description: dut Location: 9779-10226 bp Feature: domain Description: dut Location: 9779-1 0226 bp Feature: gene Location: 10338-10934 bp Feature: domain Description: slmA Location: 10344-10920 bp Feature: domain Description: slmA Location: 1 0344-1 0920 bp Feature: gene Location: 10980-11939 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11115-11664 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 1 1 5-1 1 664 bp Feature: gene Location: 12237-12878 bp Feature: domain Description: pyrE Location: 12240-12873 bp Feature: domain Description: pyrE Location: 1 2240-1 2873 bp Feature: gene Location: 12944-13660 bp Feature: domain Description: rph Location: 12947-13655 bp Feature: domain Description: rph Location: 1 2947-1 3655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), dut (TIGR00576)

Seq: NTDO01000054.1 Escherichia coli strain KCJK514 NODE_35_length_24538_cov_27.118_ID_69, whole genome shotgun sequence (24538 bp)
Overview 1 RT 1: 11432-14906 bp Neighborhood of RT #1 [11432, 14923] Rep_3 Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 11432-11740 bp Feature: domain Description: Rep_3 Location: 11438-11702 bp Feature: domain Description: Rep_3 Location: 11438-11702 bp Feature: gene Location: 11750-12447 bp Feature: domain Description: Zn_Tnp_IS1 Location: 11756-11858 bp Feature: domain Description: Zn_Tnp_IS1 Location: 11756-11858 bp Feature: domain Description: HTH_Tnp_IS1 Location: 11879-12011 bp Feature: domain Description: HTH_Tnp_IS1 Location: 11879-12 011 bp Feature: gene Location: 12599-14083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13001-13691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13001-13691 bp Feature: gene Location: 14083-14334 bp Feature: gene Location: 14492-14923 bp Feature: domain Description: PRK10276 Location: 14543-14906 bp Feature: domain Description: PRK102 76 Location: 14543-14906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)