myRT

myRT report for GCA_002324295.1_ASM232429v1

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Seq: NTDH01000022.1 Escherichia coli strain KCJK506 NODE_7_length_258987_cov_21.9066_ID_13, whole genome shotgun sequence (258987 bp)
Overview 1 RT 1: 139891-143770 bp Neighborhood of RT #1 [139891, 143775] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 139891-140346 bp Feature: domain Description: dut Location: 139894-140341 bp Feature: domain Description: dut Location: 1 39894-1 40341 bp Feature: gene Location: 140453-141049 bp Feature: domain Description: slmA Location: 140459-141035 bp Feature: domain Description: slmA Location: 1 40459-1 41 035 bp Feature: gene Location: 141095-142054 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 141230-141779 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 41 230-1 41 779 bp Feature: gene Location: 142352-142993 bp Feature: domain Description: pyrE Location: 142355-142988 bp Feature: domain Description: pyrE Location: 1 42355-1 42988 bp Feature: gene Location: 143059-143775 bp Feature: domain Description: rph Location: 143062-143770 bp Feature: domain Description: rph Location: 1 43062-1 43770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NTDH01000033.1 Escherichia coli strain KCJK506 NODE_24_length_24538_cov_53.7582_ID_47, whole genome shotgun sequence (24538 bp)
Overview 1 RT 1: 11432-14906 bp Neighborhood of RT #1 [11432, 14923] Rep_3 Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 11432-11740 bp Feature: domain Description: Rep_3 Location: 11438-11702 bp Feature: domain Description: Rep_3 Location: 11438-11702 bp Feature: gene Location: 11750-12447 bp Feature: domain Description: Zn_Tnp_IS1 Location: 11756-11858 bp Feature: domain Description: Zn_Tnp_IS1 Location: 11756-11858 bp Feature: domain Description: HTH_Tnp_IS1 Location: 11879-12011 bp Feature: domain Description: HTH_Tnp_IS1 Location: 11879-12 011 bp Feature: gene Location: 12599-14083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13001-13691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13001-13691 bp Feature: gene Location: 14083-14334 bp Feature: gene Location: 14492-14923 bp Feature: domain Description: PRK10276 Location: 14543-14906 bp Feature: domain Description: PRK102 76 Location: 14543-14906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)