myRT

myRT report for GCA_002324305.1_ASM232430v1

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Seq: NTDN01000024.1 Escherichia coli strain KCJK513 NODE_13_length_152590_cov_27.1077_ID_25, whole genome shotgun sequence (152590 bp)
Overview 1 RT 1: 37932-41811 bp Neighborhood of RT #1 [37932, 41816] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 37932-38387 bp Feature: domain Description: dut Location: 37935-38382 bp Feature: domain Description: dut Location: 37935-38382 bp Feature: gene Location: 38494-39090 bp Feature: domain Description: slmA Location: 38500-39076 bp Feature: domain Description: slmA Location: 38500-39076 bp Feature: gene Location: 39136-40095 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39271-39820 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39271 -39820 bp Feature: gene Location: 40393-41034 bp Feature: domain Description: pyrE Location: 40396-41029 bp Feature: domain Description: pyrE Location: 40396-41 029 bp Feature: gene Location: 41100-41816 bp Feature: domain Description: rph Location: 41103-41811 bp Feature: domain Description: rph Location: 41 1 03-41 81 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NTDN01000056.1 Escherichia coli strain KCJK513 NODE_33_length_24538_cov_18.864_ID_65, whole genome shotgun sequence (24538 bp)
Overview 1 RT 1: 11432-14906 bp Neighborhood of RT #1 [11432, 14923] Rep_3 Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 11432-11740 bp Feature: domain Description: Rep_3 Location: 11438-11702 bp Feature: domain Description: Rep_3 Location: 11438-11702 bp Feature: gene Location: 11750-12447 bp Feature: domain Description: Zn_Tnp_IS1 Location: 11756-11858 bp Feature: domain Description: Zn_Tnp_IS1 Location: 11756-11858 bp Feature: domain Description: HTH_Tnp_IS1 Location: 11879-12011 bp Feature: domain Description: HTH_Tnp_IS1 Location: 11879-12 011 bp Feature: gene Location: 12599-14083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13001-13691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13001-13691 bp Feature: gene Location: 14083-14334 bp Feature: gene Location: 14492-14923 bp Feature: domain Description: PRK10276 Location: 14543-14906 bp Feature: domain Description: PRK102 76 Location: 14543-14906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)