myRT

myRT report for GCA_002324435.1_ASM232443v1

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Seq: NTDM01000011.1 Escherichia coli strain KCJK512 NODE_26_length_17183_cov_9.3132_ID_51, whole genome shotgun sequence (17183 bp)
Overview 1 RT 1: 4221-7695 bp Neighborhood of RT #1 [4221, 7712] Rep_3 Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 4221-4529 bp Feature: domain Description: Rep_3 Location: 4227-4491 bp Feature: domain Description: Rep_3 Location: 4227-4491 bp Feature: gene Location: 4539-5236 bp Feature: domain Description: Zn_Tnp_IS1 Location: 4545-4647 bp Feature: domain Description: Zn_Tnp_IS1 Location: 4545-4647 bp Feature: domain Description: HTH_Tnp_IS1 Location: 4668-4800 bp Feature: domain Description: HTH_Tnp_IS1 Location: 4668-4800 bp Feature: gene Location: 5388-6872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5790-6480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5790-6480 bp Feature: gene Location: 6872-7123 bp Feature: gene Location: 7281-7712 bp Feature: domain Description: PRK10276 Location: 7332-7695 bp Feature: domain Description: PRK1 0276 Location: 7332-7695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: NTDM01000032.1 Escherichia coli strain KCJK512 NODE_9_length_220775_cov_10.1584_ID_17, whole genome shotgun sequence (220775 bp)
Overview 1 RT 1: 77484-81363 bp Neighborhood of RT #1 [77484, 81368] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 77484-78200 bp Feature: domain Description: rph Location: 77487-78195 bp Feature: domain Description: rph Location: 77487-78195 bp Feature: gene Location: 78266-78907 bp Feature: domain Description: pyrE Location: 78269-78902 bp Feature: domain Description: pyrE Location: 782 69-78902 bp Feature: gene Location: 79205-80164 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79340-79889 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79340-79889 bp Feature: gene Location: 80210-80806 bp Feature: domain Description: slmA Location: 80216-80792 bp Feature: domain Description: slmA Location: 802 16-80792 bp Feature: gene Location: 80913-81368 bp Feature: domain Description: dut Location: 80916-81363 bp Feature: domain Description: dut Location: 80916-81363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)