myRT

myRT report for GCA_002324765.1_ASM232476v1

Download annotations/find similar RTs

Seq: NTEI01000118.1 Escherichia coli strain KCJK4166 NODE_101_length_471_cov_0.764535_ID_201, whole genome shotgun sequence (471 bp)
Overview 1 RT 1: 1-265 bp Neighborhood of RT #1 [1, 443] RVT-CRISPR-like Feature: gene Location: 1-443 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 7-265 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 7-265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: NTEI01000041.1 Escherichia coli strain KCJK4166 NODE_47_length_22168_cov_26.1867_ID_93, whole genome shotgun sequence (22168 bp)
Overview 1 RT 1: 9616-13069 bp Neighborhood of RT #1 [9616, 13107] PRK10276 RVT-GII Zn_Tnp_IS1 HTH_Tnp_IS1 Rep_3 Feature: gene Location: 9616-10047 bp Ori: PBT82406.1 Feature: domain Description: PRK10276 Location: 9667-10030 bp Feature: domain Description: PRK102 76 Location: 9667-10030 bp Feature: gene Location: 10205-10456 bp Feature: gene Location: 10456-11940 bp Ori: PBT82408.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10858-11548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10858-11548 bp Feature: gene Location: 12092-12789 bp Feature: domain Description: Zn_Tnp_IS1 Location: 12098-12200 bp Feature: domain Description: Zn_Tnp_IS1 Location: 12 098-12 2 00 bp Feature: domain Description: HTH_Tnp_IS1 Location: 12221-12353 bp Feature: domain Description: HTH_Tnp_IS1 Location: 12 2 2 1-12 353 bp Feature: gene Location: 12799-13107 bp Feature: domain Description: Rep_3 Location: 12805-13069 bp Feature: domain Description: Rep_3 Location: 12 805-13069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), Rep_3 (pfam01051)

Seq: NTEI01000104.1 Escherichia coli strain KCJK4166 NODE_33_length_41050_cov_30.6745_ID_65, whole genome shotgun sequence (41050 bp)
Overview 1 RT 1: 123-2753 bp Neighborhood of RT #1 [123, 2752] RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 Feature: gene Location: 123-779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219-777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219-777 bp Feature: gene Location: 903-1484 bp Feature: gene Location: 1397-2752 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1514-1727 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1514-1727 bp Feature: domain Description: zf-IS66 Location: 1748-1880 bp Feature: domain Description: zf-IS66 Location: 1748-1880 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1925-2753 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1925-2753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)