myRT

myRT report for GCA_002325125.1_ASM232512v1

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Seq: DCRG01000026.1 TPA_asm: Sphingobacterium sp. UBA1498 UBA1498_contig_30, whole genome shotgun sequence (258155 bp)
Overview 1 RT 1: 2-4025 bp Neighborhood of RT #1 [2, 4027] YbjQ RVT-Retrons IS285 HTH_Tnp_1 Feature: gene Location: 2-268 bp Feature: domain Description: YbjQ Location: 56-179 bp Feature: domain Description: YbjQ Location: 56-1 79 bp Feature: gene Location: 618-2324 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 735-1335 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 735-1 335 bp Feature: gene Location: 2506-3735 bp Feature: domain Description: IS285 Location: 2557-3715 bp Feature: domain Description: IS285 Location: 2557-371 5 bp Feature: gene Location: 3899-4027 bp Feature: domain Description: HTH_Tnp_1 Location: 3905-4025 bp Feature: domain Description: HTH_Tnp_1 Location: 3905-4025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), HTH_Tnp_1 (pfam01527), RVT-Retrons

Seq: DCRG01000035.1 TPA_asm: Sphingobacterium sp. UBA1498 UBA1498_contig_581, whole genome shotgun sequence (8901 bp)
Overview 1 RT 1: 1887-6594 bp Neighborhood of RT #1 [1887, 6896] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C CatE Feature: gene Location: 1887-2768 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1989-2205 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1989-2 2 05 bp Feature: domain Description: zf-IS66 Location: 2235-2325 bp Feature: domain Description: zf-IS66 Location: 2 2 35-2 32 5 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2382-2721 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 382 -2 72 1 bp Feature: gene Location: 2865-2999 bp Feature: gene Location: 3286-4956 bp Feature: RT Description: RVT_N Location: 3346-3580 bp Feature: RT Description: RVT_N Location: 3346-3580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3634-4264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3634-42 64 bp Feature: domain Description: GIIM Note: maturase Location: 4330-4564 bp Feature: domain Description: GIIM Note: maturase Location: 4330-4564 bp Feature: gene Location: 5088-5795 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5100-5637 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5100-5637 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5673-5766 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5673-5766 bp Feature: gene Location: 6243-6896 bp Feature: domain Description: CatE Location: 6249-6594 bp Feature: domain Description: CatE Location: 62 49-6594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), CatE (COG2514)